DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18135 and Gdpd2

DIOPT Version :10

Sequence 1:NP_788526.1 Gene:CG18135 / 40073 FlyBaseID:FBgn0036837 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001100414.1 Gene:Gdpd2 / 302421 RGDID:1560780 Length:538 Species:Rattus norvegicus


Alignment Length:321 Identity:68/321 - (21%)
Similarity:113/321 - (35%) Gaps:102/321 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   448 PKSWPNLDVGHRGNGKSYIADAP-AERENTIASFLSAHEHHADMIELDVHLTADGVPVIYHDFGL 511
            ||  |.| |||||        || ...|||:.|.....|..|.:.|.||.:::||||.:.||   
  Rat   222 PK--PGL-VGHRG--------APMLAPENTLMSLRKTAECGAAVFETDVMVSSDGVPFLMHD--- 272

  Fly   512 RTAPPGKQISRPDQLEYVL-------IKDINYELLKRLRIFSVIAGQ--VREYP-------SHNA 560
                  :::||...:..|.       ..|.::..|::|.     ||.  :...|       |.:.
  Rat   273 ------ERLSRTTNVASVFPERISAHSSDFSWAELQKLN-----AGTWFLERRPFWGAKKLSGSD 326

  Fly   561 EPRMEHRIFPTLVEVL-EKLPKSLGIDVEIKWPQRRQGGGSEAEQTIDKNFFADKVIHQVIQKGC 624
            :....::..|.|.||| |....:|.:..:::.|.|..         ...:.|.::.:..|:....
  Rat   327 QKEAGNQTVPALEEVLKEAATLNLSVMFDLRRPPRNH---------TYYDTFVNQTVEAVLSASV 382

  Fly   625 GRPIIFSSFDADMCTMLRFKQNVFPVM-----FLTQGETKKWQ---------PFLDLR------- 668
            .:.::....|.|..|:    |...|.|     :.....|::.|         |.||::       
  Rat   383 PQAMVLWLPDEDRATV----QQRAPRMRQIYGYRGSNGTERPQFLNLPYQDLPVLDIKALHQDNV 443

  Fly   669 -TRTFIAAVNNAQAFELAGTAPHAEDFLGENASEMLRKAKDLGQIAVIWGDDCNSKERVQY 728
             ...|:  ||....|.|...|                      .:..:..:||...:::||
  Rat   444 SVNLFV--VNKPWLFSLLWCA----------------------GVDSVTTNDCQLLQQMQY 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18135NP_788526.1 CBM20_Prei4 166..288 CDD:99888
GDPD_GDE5 454..741 CDD:176549 65/315 (21%)
Gdpd2NP_001100414.1 PI-PLCc_GDPD_SF 198..499 CDD:472694 68/321 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.