DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18135 and gde1

DIOPT Version :10

Sequence 1:NP_788526.1 Gene:CG18135 / 40073 FlyBaseID:FBgn0036837 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001417947.1 Gene:gde1 / 2543677 PomBaseID:SPAPB1E7.05 Length:1135 Species:Schizosaccharomyces pombe


Alignment Length:750 Identity:184/750 - (24%)
Similarity:296/750 - (39%) Gaps:207/750 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 LHSNPMAM----SRTVLILAVALSLQ---CAAFVDGASITYGTGNELESGSGSSAACKPTLREF- 173
            |.:||.|.    |.|.|:||.|..|.   ......|||:     :|::| ||.:|..:..:|.: 
pombe   448 LGANPSARDFLNSWTPLMLASATGLSEIVSILVASGASV-----DEVDS-SGWTAMEQAVVRGYL 506

  Fly   174 ----NVRLEVPLAAEERLGL-TGDVKALG----------EWQLSRSVALESLDELNWQATVALQS 223
                .:|.:|.| :::.:.| |..:||..          :.||||||.:..:.:|..:..|:||.
pombe   507 HLADKLRTQVAL-SDKPVNLHTLYIKASSSEMRSRKRAMDLQLSRSVVIIRISDLAGRIRVSLQG 570

  Fly   224 CRQLEYRYFVYVEDLS-GYKQIRRWETHFKPRSLGPCTELQCSQLDVFGITSDNSDLKPQVHRGW 287
            ...      |||...| .:...|.....|..:|        ...|.....|:.|..:.|...:  
pombe   571 DDA------VYVSGRSPSFAASRPSSVDFMSQS--------TDSLSKNDTTASNGSMTPSSSQ-- 619

  Fly   288 LNHEAILQLKFN-----GEKMFQVHDIETFDPQHVQLKIVPVEKTAGLHVEYSKQEYGKSQLELQ 347
             |:..|:.:..:     ||...:    ...:|..:      .:.:..||.:.:::.      ..|
pombe   620 -NNSVIIDIPRSHFDNAGEVCLE----NLAEPDEI------ADDSIHLHYDAAQEN------SPQ 667

  Fly   348 PTFG--VPYTKGDIVIF------HITLPLERMMEQHFRLECYSMSNELLGSATLVTSDLTGSEG- 403
            |..|  .||.    ::|      ..|:.::.:..:         |:::||......:.|....| 
pombe   668 PVNGSSPPYE----LVFVTRNTEEATITIDLLANR---------SHKILGRTVCCLTSLVSDLGN 719

  Fly   404 -------VLHLPIKSAK--------NADETLARL---------------RLPYVAVQPYRYSPLD 438
                   :..||:.|:|        |||..::::               .|...||.....:.|:
pombe   720 HMQSLKPLAPLPLLSSKTLKPIAHVNADVLISKVTVDDRFSSNDGISTPALSLEAVSNVSRTALE 784

  Fly   439 FKNTYAHYWPKSWPNLD----------VGHRGNGKSYIADAPAER------ENTIASFLSAHEHH 487
            ......|   ||.....          :||||.||:     ..:|      |||:.||:.|.:..
pombe   785 DAERSLH---KSATTTSESGKSNGVAVIGHRGLGKN-----QPDRLSLQLGENTLQSFIKAADLG 841

  Fly   488 ADMIELDVHLTADGVPVIYHDFGLRTAPPGKQISRPDQLEYVL---------IKDINYELLKRLR 543
            |..:||||.:|.|.|||:||||.:.......|: ....||..|         |||...::.::.|
pombe   842 ASYVELDVQMTKDMVPVVYHDFIVNETGTDAQV-HSLTLEQFLGASHSPSEEIKDDASDIQQKRR 905

  Fly   544 ------IFSVIAGQVR--EYPSHNA--EPR------MEHRI---FPTLVEVLEKLPKSLGIDVEI 589
                  .|:....||.  |:...||  :|:      :.|.|   |.||.:||:::|:|:|::||.
pombe   906 PRAYSSSFTPSGSQVNFGEFAEENARLKPKVYKGNALGHTICAPFTTLKDVLKEVPQSVGLNVEF 970

  Fly   590 KWPQRRQGGGSEAEQ------TIDKNFFADKVIHQVIQKGCGRPIIFSSFDADMCTMLRFKQNVF 648
            |:|..     ||||:      ..|.||:.|.::..:.:.|..|..|||||:.|:|.:|..| :..
pombe   971 KYPML-----SEAEEEKLLPIAYDYNFYVDTILSIIKKYGGKRKYIFSSFNPDICILLSLK-STN 1029

  Fly   649 PVMFLTQGETKKWQPFLDLRTRTFIAAVNNAQAFELAGTAPHAEDFLG-ENASE-------MLRK 705
            ||:|||:|.|         ..||.:.|.:..||.:.|.    ...||| .:|.|       :::.
pombe  1030 PVLFLTEGGT---------AYRTDVRAASLRQALKFAS----QWSFLGIVSACEPLIMCPRLIKA 1081

  Fly   706 AKDLGQIAVIWGDDCNSKERVQYFTRIGATATCYD 740
            .|.||.....:|...|..:.|:...|.|..|...|
pombe  1082 VKQLGLSCYTYGVLNNDVDNVRRQVRFGVDAVIVD 1116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18135NP_788526.1 CBM20_Prei4 166..288 CDD:99888 29/138 (21%)
GDPD_GDE5 454..741 CDD:176549 102/344 (30%)
gde1NP_001417947.1 SPX 2..143 CDD:269894
ANKYR <354..532 CDD:440430 25/90 (28%)
ANK repeat 357..382 CDD:293786
ANK repeat 395..423 CDD:293786
ANK repeat 425..456 CDD:293786 4/7 (57%)
ANK repeat 458..490 CDD:293786 11/36 (31%)
GDPD_YPL110cp_fungi 805..1127 CDD:176548 102/336 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.