DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11619 and Gdpd3

DIOPT Version :10

Sequence 1:NP_649081.1 Gene:CG11619 / 40072 FlyBaseID:FBgn0036836 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_001292116.1 Gene:Gdpd3 / 293490 RGDID:1308386 Length:320 Species:Rattus norvegicus


Alignment Length:216 Identity:49/216 - (22%)
Similarity:85/216 - (39%) Gaps:49/216 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   314 LPIFASLQNLAIGEITLPYLVVQPMPKVEAGNLRASFHHYWPDNWPTLDVGYRGLGASYFQSSTS 378
            ||...|...|:|..:..|:|:                |..|...:......:||       .|..
  Rat     9 LPTLGSYVILSIFFLRRPHLL----------------HTPWAPGFSIRLAAHRG-------GSGE 50

  Fly   379 LTENTIESYLAVLKAKGDMVQLDVQLTKDYVPVVWHGFGFYTSDTDRSVRDRFDLRFVLIRELTY 443
            ..|||:|:....:..:.|:::.|.|||:|.|.||.|         |:::..:..|. ..|..|.:
  Rat    51 RLENTMEAIENSMAQRADLLEFDCQLTRDGVVVVSH---------DKNLSRQSGLN-KDINTLDF 105

  Fly   444 SELKASRVFILKRWTVQEYTNLNVKDVSQKHRIFPKLSEVFEALPKTLGLLVEIKWP-QIMASGV 507
            ::|.     :.|......::..:....|.:|.|  .|.:||:..|:| .:.:|||.. :.:...|
  Rat   106 AQLP-----LYKEELEIYFSPGHFAHGSDRHMI--SLEDVFQKFPRT-PMCLEIKEKNEELIHKV 162

  Fly   508 PESTQSLNKNIYVDRILQITI 528
            ....:..|:|       :|||
  Rat   163 ANMARRFNRN-------EITI 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11619NP_649081.1 CBM20_Prei4 69..196 CDD:99888
GDPD_GDE5 361..648 CDD:176549 40/169 (24%)
Gdpd3NP_001292116.1 GDPD_GDE4 13..310 CDD:176553 47/212 (22%)
Blue background indicates that the domain is not in the aligned region.

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