DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75d and GLR2.1

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_198062.2 Gene:GLR2.1 / 832768 AraportID:AT5G27100 Length:901 Species:Arabidopsis thaliana


Alignment Length:493 Identity:96/493 - (19%)
Similarity:163/493 - (33%) Gaps:152/493 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 KRTLVGHNIRNSRHVIHALQHFGSAITYRQDLEGIVFNSAIVIAFPDLFTNIEDLSLRHIDTISK 291
            ||..:|..:.|               |::|          .|.|..|..||....|...||....
plant   452 KRLQIGVPVNN---------------TFQQ----------FVKATRDPITNSTIFSGFSIDYFEA 491

  Fly   292 VNHRLMLELANRLNMSYNTYQTVNYGWRQPNGSFDGLMGRFQ----RYELDLAQLAIFMRLDRIA 352
            |...:..::         :|..:.:    .:|.:|.|:  :|    :|:..:|...|  ..:|..
plant   492 VIQAIPYDI---------SYDFIPF----QDGGYDALV--YQVYLGKYDAVVADTTI--SSNRSM 539

  Fly   353 LVDFVAETYRVRAGIMFRQPPLSAV---ANIFAMPFENDVW-VSILMLLIITTVVLVLEL----- 408
            .||| :..| ..:|:....|...:|   :.||.||....:| :|:|...||..||.|||.     
plant   540 YVDF-SLPY-TPSGVGLVVPVKDSVRRSSTIFLMPLTLALWLISLLSFFIIGLVVWVLEHRVNPD 602

  Fly   409 FFSPHNHDMSYMDTLNFVWGAMCQQGFYVEVRNRS--ARIIVFTTFVAALFLFTSFSANIVALLQ 471
            |..|..:.:|     ...|.:.....|....|..|  ||::|...:...|.|..|::|::.:||.
plant   603 FDGPGQYQLS-----TIFWFSFSIMVFAPRERVLSFWARVVVIIWYFLVLVLTQSYTASLASLLT 662

  Fly   472 SPSDAIQSLSDLGQSPLEIGVQDTQYNKIYFTESTDPVTKNLYHKKIASKGENIYMRPLLGMEKM 536
                                           |:...|...|:  ..:.:|||::..:....:.::
plant   663 -------------------------------TQHLHPTVTNI--NSLLAKGESVGYQSSFILGRL 694

  Fly   537 RTGLFAYQVELQAGYQIVSDTFSEPEKCG---------------LMEL----------------- 569
            |...|:..       .:||  :..||.|.               |||:                 
plant   695 RDSGFSEA-------SLVS--YGSPEHCDALLSKGQAEGGVSAVLMEVPYVRIFLGQYCNKYKMV 750

  Fly   570 -EPFQLPMLAIPTRKNFPYKELIRRQLRWQREVSLVNREERKWI-PQKPKCEGGVG--------G 624
             .||::..|........|....|.|.:....|.:..|:.|..|. |....|...:.        .
plant   751 QTPFKVDGLGFVFPIGSPLVADISRAILKVEESNKANQLENAWFKPIDESCPDPLTNPDPNPSVS 815

  Fly   625 FVSIGITECRYALGIFGCGAAVSFVLFLFEFIFRHFKQ 662
            |..:|..    :..:....||:...:.|.:|:::..|:
plant   816 FRQLGFD----SFWVLFLVAAIVCTMALLKFVYQFLKE 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 46/198 (23%)
Lig_chan 388..644 CDD:278489 56/305 (18%)
GLR2.1NP_198062.2 PBP1_GABAb_receptor 49..411 CDD:107361
ANF_receptor 49..392 CDD:279440
GluR_Plant 452..794 CDD:270404 86/432 (20%)
Periplasmic_Binding_Protein_Type_2 478..>685 CDD:304360 56/263 (21%)
Lig_chan 576..835 CDD:278489 58/309 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.