DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and GLR2.6

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_001330285.1 Gene:GLR2.6 / 830988 AraportID:AT5G11180 Length:967 Species:Arabidopsis thaliana


Alignment Length:487 Identity:99/487 - (20%)
Similarity:177/487 - (36%) Gaps:84/487 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 KVAAWKPLKRTLVGHNIRNSRHVIHALQHFGSAITYRQDLEGIVFNSAIVIAFP--DLFTNIEDL 281
            ||...|.|:....|..|.:|.|.:..:...|..|...:..|.......:.||.|  |.|.|..::
plant   414 KVGLVKSLRVNQTGIKISHSSHRLRPIIWPGDTIFVPKGWEFPTNAKKLRIAVPKKDGFNNFVEV 478

  Fly   282 SL---RHIDTIS----KVNHRLMLELANRLNMSYNTYQTVNYGWRQPNGSFDGL-----MGRFQR 334
            :.   .:..||:    .|....|.::...:...|..::|.:   .:|.||:|.:     :|.|..
plant   479 TKDANTNAPTITGFCIDVFDTAMRQMPYAVPYEYIPFETPD---GKPRGSYDEMVYHVFLGEFDG 540

  Fly   335 YELDLAQLAIFMRLDRIALVDFV---AETYRVRAGIMFRQPPLSAVAN---IFAMPFENDVW-VS 392
            ...|...||     :|...|||.   :||     ||:...|.......   :|..|...::| ::
plant   541 AVGDTTILA-----NRSTYVDFALPYSET-----GIVVVVPVKDEREKGKWVFLKPLTRELWFLT 595

  Fly   393 ILMLLIITTVVLVLELFFSPHNHDMSYMDTLNFVWGAMCQQGFYVEVRNRSA---RIIVFTTFVA 454
            ....|.|..:|.:.|...|......|.::.::.|:.......|:..:|...:   |::|......
plant   596 AASFLYIGIMVWIFEYQASGDFRKQSIINKISNVFYFSFSTLFFAHMRPSESIFTRVLVVVWCFV 660

  Fly   455 ALFLFTSFSANIVALL--QSPSDAIQSLSDLGQSPLEIGVQDTQY-----NKIYFTES------T 506
            .|.|..|::|.:.::|  |.....::.:.||..|.:.||.|...:     .::.:.||      |
plant   661 LLILTQSYTATLTSMLTVQELRPTVRHMDDLRNSGVNIGYQTGSFTFERLKQMGYKESRLKTYDT 725

  Fly   507 DPVTKNLYHKKIASKG------ENIYMRPLLGMEKMRTGLFAYQVELQAGYQIVSDTFSEPEKCG 565
            ......|:.||.::.|      |..|::             .:..:..:.|.|:..|| :.:..|
plant   726 PQEMHELFLKKSSNGGIDAAFDEVAYVK-------------LFMAKYCSKYTIIEPTF-KADGFG 776

  Fly   566 LMELEPFQLPMLAIPTRKNFPYKELIRRQLRWQREVSLVNREERKWIPQKPKCEGGVGGFVSIGI 630
                  |..|:       ..|....:.||:....|...:...|.||:..:..|.........|.:
plant   777 ------FAFPL-------GSPLVPDLSRQILNITEGETMKAIENKWLLGEKHCLDSTTSDSPIRL 828

  Fly   631 TECRYALGIFGCGAAVSFVLFLFEFIFRHFKQ 662
            ....:. .:|.....||.:|.|...:.|.::|
plant   829 DHHSFE-ALFTIVFVVSMLLLLAMLVCRRYRQ 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 40/200 (20%)
Lig_chan 388..644 CDD:278489 50/278 (18%)
GLR2.6NP_001330285.1 PBP1_GABAb_receptor_plant 38..421 CDD:380645 3/6 (50%)
GluR_Plant 460..810 CDD:270404 78/389 (20%)
Lig_chan 590..842 CDD:365843 50/279 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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