DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and GLUR2

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_001320141.1 Gene:GLUR2 / 829682 AraportID:AT4G35290 Length:912 Species:Arabidopsis thaliana


Alignment Length:657 Identity:129/657 - (19%)
Similarity:235/657 - (35%) Gaps:171/657 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 STHWETSFL--LPALPYK-----MGILLLEFSSECALN----LLRWSAASE-------HNYFTTN 170
            :|.|.||.|  :..||.|     .|:|.|...:..:..    :.||:..|.       :..:..:
plant   256 ATTWLTSLLDSVNPLPAKTAESLRGVLTLRIHTPNSKKKKDFVARWNKLSNGTVGLNVYGLYAYD 320

  Fly   171 RFWLL------LTEDPGDIDLLEDPEI-------------------------------------- 191
            ..|::      |.:...:|....||::                                      
plant   321 TVWIIARAVKRLLDSRANISFSSDPKLTSMKGGGSLNLGALSIFDQGSQFLDYIVNTNMTGVTGQ 385

  Fly   192 --FIPPDSELRVLH---------YENVGNFS----CSLI---DLYKVAAWKPLKRTLVGHNIRNS 238
              |:|..|.::..:         :..:|.:|    .|:|   .|||          .:.:...::
plant   386 IQFLPDRSMIQPSYDIINVVDDGFRQIGYWSNHSGLSIIPPESLYK----------KLSNRSSSN 440

  Fly   239 RHVIHALQHFGSAITYRQDLEGIVF---NSAIVIAFPDLFTNIEDLSLRHIDTISKVNHRL--ML 298
            :|:.:.....|::.|.|    |.||   ...:.|..||..:..|.:|  .:|..:||....  :.
plant   441 QHLNNVTWPGGTSETPR----GWVFPNNGRRLRIGVPDRASFKEFVS--RLDGSNKVQGYAIDVF 499

  Fly   299 ELANRLNMSY---NTYQTVNYGWRQPN----------GSFDGLMGRFQRYELDLAQLAIFMRLDR 350
            |.|.:| :||   :.:.....|.:.||          |.||.::|          .:||..:..|
plant   500 EAAVKL-ISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGVFDAVVG----------DIAIVTKRTR 553

  Fly   351 IALVDFVAETYRVRAGIMFRQP--PLSAVANIFAMPFENDVW-VSILMLLIITTVVLVLELFFSP 412
            |  ||| .:.| :.:|::...|  .|:.....|..||...:| |:....||:.:|:.:||...:.
plant   554 I--VDF-TQPY-IESGLVVVAPVTKLNDTPWAFLRPFTPPMWAVTAAFFLIVGSVIWILEHRIND 614

  Fly   413 HNHDMSYMDTLNFVWGAMCQQGFYVEVRNRSA---RIIVFTTFVAALFLFTSFSANIVALL--QS 472
            ..........:..:|.:.... |:....|..:   |.::.......|.:.:|::|::.::|  |.
plant   615 EFRGPPRKQIVTILWFSFSTM-FFSHRENTVSTLGRAVLLIWLFVVLIITSSYTASLTSILTVQQ 678

  Fly   473 PSDAIQSLSDLGQSPLEIGVQDTQYNKIYFTESTDPVTKNLY----HKKIASKGENIYMRPLLGM 533
            .:..|:.:..|..|...:|.|...|.:.|..:..:.....|.    .|:.|:..:|..:..::. 
plant   679 LNSPIRGVDTLISSSGRVGFQVGSYAENYMIDELNIARSRLVPLGSPKEYAAALQNGTVAAIVD- 742

  Fly   534 EKMRTGLFAYQVELQAGYQIVSDTFSEPEKCGLMELEPFQLPMLAIPTRKNFPYKELIRRQLRWQ 598
            |:....||..:.   .|:.|....|:   :.|.....|...| |||.          :...:...
plant   743 ERPYVDLFLSEF---CGFAIRGQEFT---RSGWGFAFPRDSP-LAID----------MSTAILGL 790

  Fly   599 REVSLVNREERKWIPQKPKCEGGVGGFVSIGITE---CRYALGIF-GCGAAVSFVLFLFEF---- 655
            .|...:.:...||: .:..| ..:.|.||...:|   .|...|:| .||.:....||::.|    
plant   791 SETGQLQKIHDKWL-SRSNC-SNLNGSVSDEDSEQLKLRSFWGLFLVCGISCFIALFIYFFKIVR 853

  Fly   656 -IFRHFK 661
             .|||.|
plant   854 DFFRHGK 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 43/204 (21%)
Lig_chan 388..644 CDD:278489 51/269 (19%)
GLUR2NP_001320141.1 PBP1_GABAb_receptor_plant 31..422 CDD:380645 24/165 (15%)
GluR_Plant 466..804 CDD:270404 75/373 (20%)
Lig_chan 590..840 CDD:395014 52/270 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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