DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and GLR1.4

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_187408.2 Gene:GLR1.4 / 819940 AraportID:AT3G07520 Length:861 Species:Arabidopsis thaliana


Alignment Length:762 Identity:130/762 - (17%)
Similarity:250/762 - (32%) Gaps:234/762 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 WRSEYSRQDPDPKTRWGNQLPDMLVAYYRHHGVH--------------------------SLMLV 65
            ||:.....:.|...|...|   .||.:::.:.:|                          .:.:.
plant   178 WRTAVLIYEDDDDWRESIQ---PLVGHFQQNAIHIEYKAEFSVSSNEECIMKQLRKFKASGIRIF 239

  Fly    66 VCHTD--IADFRLWKLWQHFN-LNNFYVQVSTESSLRDLQHVDALDEHK---------DAPPPKS 118
            |.|..  ||: ||:...:... :...|..:.|..|:.:.|..:.|.:.:         ..|..:.
plant   240 VAHISERIAN-RLFPCARRLGMMEEGYAWILTARSMNNFQDTNYLAKEEMEGVIGFKSYIPLTEE 303

  Fly   119 FHANNSTHWETSFLLPALPYKMGILLLEFSSECALNLLRWSAASEHNYFTTNRFWLLLTEDP--- 180
            .| |.:..|:.|..|..:..:|.:..: ::.:.|.:|.|   |:|.........:.||...|   
plant   304 LH-NFTLRWKRSLRLEEVVTRMSVCSI-WAHDIAWSLAR---AAEVAKLPGLSVYDLLEAIPESA 363

  Fly   181 ------GDIDLLEDPEIFIPPDSEL--------RVLHYENVGNF------SCSLIDLYKVAAWKP 225
                  |||..::  :.||....|:        |.:...|.|:|      ..|.....:...| |
plant   364 KHKGLSGDIKFID--KKFISDKFEIVNMIGRGERSVGLWNSGSFISNRRRRLSSTKALETIIW-P 425

  Fly   226 LKRTLVG--HNIRNSRH------------------VIHALQHFGSAIT----YRQDLEGIVFNSA 266
            ...|.:.  .:::..||                  ::.....|.:.:|    |..|    ||.::
plant   426 GGSTRIPKIRSLKEKRHGKKKKLRVLVPAGNITPQILEVKTDFKTGVTAATGYCID----VFETS 486

  Fly   267 IVIAFPDLFTNIEDLSLRHIDTISKVNHRLMLELANRLNMSYNTYQTVNYGWRQPNGSFDGLMGR 331
            |      |..|.|   :.:|.....:|::      |..::.|..|.                   
plant   487 I------LPFNYE---VEYIPWPGAINYK------NYNDLVYTLYS------------------- 517

  Fly   332 FQRYELDLAQLAIFMRLDRIALVDFVAETYRVRAGIMFRQPPLSAVAN------IFAMPFENDVW 390
             |:.:.|.|...|.:..:|...|||.         :.|....|:.|..      |...|....:|
plant   518 -QKDKYDAAVGDITITDNRSLYVDFT---------LPFTDMGLAVVTAKDKSMWIIFKPLTLSLW 572

  Fly   391 VSILMLLIIT-TVVLVLELFFSPHNHDMSYMDTLNFVWGAMCQQ-------GFYV-------EVR 440
            ::|....|:| .:|.::|      .||.:...      |:..||       ||..       .::
plant   573 LTIASFFILTGAIVWLIE------RHDNADFQ------GSCFQQIGTLLCFGFSTLVFAHRERLQ 625

  Fly   441 NRSARIIVFTTFVAALFLFTSFSANIVALLQSPSDAIQSLSDLGQSPLEIGVQDTQYNKIYFTES 505
            :..:|.:|.....|.|.|.::::|.:.:::     .:|.:..| :|...||         :|:.|
plant   626 HNMSRFVVIVWIFAVLILTSNYTATLTSVM-----TVQQIRGL-KSNENIG---------FFSAS 675

  Fly   506 TDPVTKNLYHKKIASKGENIYMRPLLGME-------KMRTGLFAYQVELQAGYQIVSDTFSEPEK 563
               :..|:.:.....:|..     ..|::       .:|.|..::.|: :..| :.......|.:
plant   676 ---IAANVVNDNPTFQGPR-----YKGLKTADDFTNALRNGTISFIVD-EVPY-VKLFVAKHPSE 730

  Fly   564 CGLMELE--------PFQLPMLAIPTRKNFPYKELIRRQLRWQREVSLVNREERKWIPQKPKCEG 620
            ..::|.|        .||         |..|..:.:.|::...|....:...|..|..::.....
plant   731 FVIVETESVTNGFGFAFQ---------KGSPLVQKVSREIEKLRRTEKLKAIENWWFQRQTTSAT 786

  Fly   621 GVGGFVSIGITECRYALGIFGCGAAVSFVLFLF-------EFIFRHF 660
            ....|..:.:...|....|.|...|.:.:::|.       :.:.:||
plant   787 SEDTFHPLTVYTFRGLFMITGVSFAFALIVYLIPWNREQRQVVLKHF 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 36/204 (18%)
Lig_chan 388..644 CDD:278489 48/285 (17%)
GLR1.4NP_187408.2 PBP1_GABAb_receptor 47..410 CDD:107361 44/242 (18%)
ANF_receptor 64..390 CDD:279440 40/222 (18%)
GluR_Plant 448..778 CDD:270404 71/423 (17%)
Periplasmic_Binding_Protein_Type_2 476..>657 CDD:304360 45/245 (18%)
Lig_chan 570..810 CDD:278489 48/285 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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