DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75d and GLR2.9

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_001325277.1 Gene:GLR2.9 / 817458 AraportID:AT2G29100 Length:942 Species:Arabidopsis thaliana


Alignment Length:673 Identity:131/673 - (19%)
Similarity:224/673 - (33%) Gaps:205/673 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 DIADFRL-WKLWQHFNLNNFYVQVSTESSLRD---------LQHVDALDEHKDAPPPKS-FHANN 123
            ::.|||| ||  :.|...|        .|:||         ...:.||.:..:....|| ::.|.
plant   287 ELGDFRLRWK--RTFEKEN--------PSMRDDLNVFALWAYDSITALAKAVEKANTKSLWYDNG 341

  Fly   124 STHWETSFLLPALPYKMGILLLEFSSECALNLLRWSA-ASEHNY--------------FTTNR-- 171
            ||..:....|.    .:|:.|...|.:.|.:.:|::. |.|...              |..|.  
plant   342 STLSKNRTDLG----NVGVSLYGPSLQKAFSEVRFNGLAGEFKLIDGQLQSPKFEIINFVGNEER 402

  Fly   172 ---FWLLLTEDPGDIDLLED------PEIF------IP-----PDSELRVLHYENVGNFSCSLID 216
               ||   |...|.:|....      |.|:      :|     |..:|||......|.|     |
plant   403 IIGFW---TPRDGLMDATSSNKKTLGPVIWPGKSKIVPKGWEIPGKKLRVGVPMKKGFF-----D 459

  Fly   217 LYKVAAWKPL--KRTLVGHNIRNSRHVIHALQHFGSAITYRQDLEGIVFNSAIVIAFPDLFTNIE 279
            ..||.. .|:  |:|..|          :|::.|.:|:   ::|..:|....:....|:.:.|: 
plant   460 FVKVTI-NPITNKKTPTG----------YAIEIFEAAL---KELPYLVIPEYVSFESPNNYNNL- 509

  Fly   280 DLSLRHIDTISKVNHRLMLELANRLNMSYNTYQTVNYGWRQPNGSFDGLMGRFQRYELDLAQLAI 344
                                          .||..:..|       |.::|            .|
plant   510 ------------------------------VYQVYDKTW-------DAVVG------------DI 525

  Fly   345 FMRLDRIALVDFVAETYRVRAGIMFRQPPLSAVAN----IFAMPFENDVWVSI-LMLLIITTVVL 404
            .:..:|....||..........:|.   |:....|    :|..|:..::||:. ...:.|..||.
plant   526 TITANRSLYADFTLPFTESGVSMMV---PVRDNENKDTWVFLEPWSLELWVTTGCFFVFIGFVVW 587

  Fly   405 VLEL-----FFSPHNHDMSYMDTLNFVWGAMCQQGF--YVEVRNRSARIIVFTTFVAALFLFTSF 462
            :.|.     |..|..:.:.     ..:|.:.....|  ...|.:..||.:|.......|.|..|:
plant   588 LFEHRVNTDFRGPPQYQIG-----TSLWFSFSTMVFAHRENVVSNLARFVVVVWCFVVLVLTQSY 647

  Fly   463 SANIVALL--QSPSDAIQSLSDLGQSP---------------LEIGVQDTQYNKIYFTESTDPVT 510
            :|::.:.|  ||....:.:::||.::.               |.:|..:.|.......:..|.:.
plant   648 TASLTSFLTVQSLQPTVTNVNDLIKNRDCVGYQGGAFVKDILLGLGFHEDQLKPFDSAKDADDLL 712

  Fly   511 KNLYHKKIASKGENI-YMRPLLGMEKMRTGLFAYQVELQAGYQIVSDTFSEPEKCGLMELEPFQL 574
            .....|.||:..:.: |::.:|.....:             |.:|..||    |.|..   .|..
plant   713 SKGKSKGIAAAFDEVAYLKAILSQSCSK-------------YVMVEPTF----KTGGF---GFAF 757

  Fly   575 PMLAIPTRKNFPYKELIRRQLRWQREVSLVNREERKWIPQKPKCEGGVGGFVSIGITECRYALGI 639
            |       ||.|......|.:....:.::..:.|.:|.|:|..|...:....|..:....: ||:
plant   758 P-------KNSPLTGEFSRAILNLTQNNVTQQIEDRWFPKKNDCPDPMTALSSNRLNLSSF-LGL 814

  Fly   640 F-GCGAAVSFVLFLFE--FIFRH 659
            | ..|.|:||.|.:|.  |::.|
plant   815 FLIAGTAISFSLLVFVALFLYEH 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 35/197 (18%)
Lig_chan 388..644 CDD:278489 53/282 (19%)
GLR2.9NP_001325277.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.