DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and grin2ab

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:XP_009304490.1 Gene:grin2ab / 570493 ZFINID:ZDB-GENE-070424-223 Length:1445 Species:Danio rerio


Alignment Length:553 Identity:106/553 - (19%)
Similarity:202/553 - (36%) Gaps:120/553 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 EDPEIFIPPDSELRVLHYENVGNFSCSLID-------------LYKVAAWKPLKRTLVGHNIRNS 238
            |.||  :||.:..|.:...|:|....|.:|             |.....|:.:.| ...|::|..
Zfish   315 EKPE--VPPSALRRYMMGVNLGGKDHSFMDDGYQVNPKLVVIVLNTEREWEKMGR-WENHSLRLK 376

  Fly   239 RHVIHALQHFGSAITYRQDLEGIVFNSAIVIAFPDLFTNIEDLSL-------------RHI-DTI 289
            ..|......||       |::....:.:||......|..::|:.:             :|| |..
Zfish   377 FPVWPRYNSFG-------DMDADENHLSIVTLEERPFVIVDDVDILTGTCMRNSVPCRKHIKDNT 434

  Fly   290 SKVNH----------RLMLELANRLNMSYNTYQTVN--YGWRQPNGSFDGLMGRFQRYELDLAQL 342
            ::.::          .::.::|..:..:|:.|...|  :| ::.|..::|::|.....:..:|..
Zfish   435 TEGSYVKKCCKGFCIDILKKIARNVKFTYDLYLVTNGKHG-KKINNVWNGMVGEVVYKKAVMAVG 498

  Fly   343 AIFMRLDRIALVDFVAETYRVRAGIMFRQPPLSAVANIFAMPFENDVWVSI-LMLLIITTVVLVL 406
            ::.:..:|...:||..........:|..:...:...:.|..||...|||.: :||||:|.:.:.|
Zfish   499 SLTINEERSEAIDFSVPFVETGISVMVSRSNGTVSPSAFLEPFSASVWVMMFVMLLIVTAIAVFL 563

  Fly   407 ELFFS-------------PHNHDMSYMDTLNFVWGAMCQQGFYVE-VRNRSARIIVFT-TFVAAL 456
            ..|.|             ||....:....:..:||.:......|: .|..:::.||.. .|.|.:
Zfish   564 FEFISPLGFNRNLAQGKDPHGPSFTIGKAVWLLWGLVFNNSVPVQNPRGTTSKFIVSVWAFFAVI 628

  Fly   457 FLFTSFSANIVALL--QSPSDAIQSLSDLG-QSPLEIGVQDTQYNKIYFTESTDP-------VTK 511
            || .|::||:.|.:  :...|.:..|||.. |||......        |...|.|       :.|
Zfish   629 FL-ASYTANLAAFMIQEEFVDQVTGLSDRKFQSPYSYSPP--------FRFGTVPNGSTERNIRK 684

  Fly   512 N--LYHKKIASKGENIYMRPLLGMEKMRTGLFAYQVELQAGYQIVSDTFSEPEKCGLMELEP--- 571
            |  ..|:.:....:...:..|:.::..:...|.|...: ..|....|     :.|.|:.:..   
Zfish   685 NYPAMHQYMVKYHQTGVVDALVSLKTGKLDAFIYDAAV-LNYMAGRD-----DGCKLVTIGSGYI 743

  Fly   572 FQLPMLAIPTRKNFPYKELI------------RRQLRWQREVSLVNREERKWIPQKPKCEGGVGG 624
            |......|..:|...:|.|:            ..:|..|....:.:.|:.:.:..:...:...|.
Zfish   744 FATTGYGIAMQKGSYWKRLVDLAILGIIGDGEMEELEAQWLTGICHNEKNEVMSSQLDVDNMAGV 808

  Fly   625 FVSIGITECRYALGIFGCGAAVSFVLFLFEFIF 657
            |         |.|   ....|:|.:.|::|.:|
Zfish   809 F---------YML---AAAMALSLITFVWEHLF 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 46/203 (23%)
Lig_chan 388..644 CDD:278489 59/298 (20%)
grin2abXP_009304490.1 PBP1_iGluR_NMDA_NR2 25..382 CDD:107373 16/69 (23%)
ANF_receptor 48..358 CDD:279440 11/44 (25%)
PBP2_iGluR_NMDA_Nr2 393..790 CDD:270436 77/412 (19%)
Lig_chan 544..816 CDD:278489 59/298 (20%)
NMDAR2_C 827..1445 CDD:287527 1/3 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591443
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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