DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75d and grin2aa

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:XP_021329529.1 Gene:grin2aa / 563297 ZFINID:ZDB-GENE-070424-129 Length:1460 Species:Danio rerio


Alignment Length:578 Identity:108/578 - (18%)
Similarity:200/578 - (34%) Gaps:161/578 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 NRFWLLLTEDPGDIDLLED-----PE---IFIPPDSELRVLHYENVGNFSCSLIDLYKVAAWKPL 226
            :::.:.:|.|..|:...||     |:   |.:..|.|     :|.:|.:....:.| |...|...
Zfish   332 HKYMMNVTWDGKDLSFTEDGYQVHPKLVVIVLNKDRE-----WEKMGKWENQSLTL-KYPVWPRF 390

  Fly   227 KRTLVGHNIRNSRHVIHALQHFGSAITYRQDLEGIVFNSAIVIAFPDLFTNIEDLS--------- 282
                      ||         ||.|.|....|..:.......:    :..|:|.|:         
Zfish   391 ----------NS---------FGDAETDDNHLTIVTLEEKPFV----IVENVERLTGTCMRNSVP 432

  Fly   283 -LRH---------------------IDTISKVNHRLMLELANRLNMSYNTYQTVN--YGWRQPNG 323
             .:|                     ||.:.|:        |..:..:|:.|...|  :| ::.|.
Zfish   433 CRKHIKDNTTEGGGTYIKKCCKGFCIDILKKI--------ARNVKFTYDLYLVTNGKHG-KKINN 488

  Fly   324 SFDGLMGRFQRYELDLAQLAIFMRLDRIALVDFVAETYRVRAGIMFRQPPLSAVANIFAMPFEND 388
            .::|::|.....:..:|..::.:..:|..::||..........:|..:...:...:.|..||...
Zfish   489 VWNGMVGEVVNKKAVMAVGSLTINEERSEVIDFSVPFVETGISVMVSRSNGTVSPSAFLEPFSAS 553

  Fly   389 VWVSI-LMLLIITTVVLVLELFFS-------------PHNHDMSYMDTLNFVWGAMCQQGFYVEV 439
            |||.: :|||::|.:.:.:..:.|             ||....:....:..:||.:....  |.|
Zfish   554 VWVMMFVMLLLVTAMAVFMFEYISPLGFNRNLAQGKDPHGPSFTMGKAVWLLWGLVFNNS--VPV 616

  Fly   440 RN----RSARIIVFTTFVAALFLFTSFSANIVALL--QSPSDAIQSLSDLG-QSPLEIGVQDTQY 497
            :|    .|..|:....|.|.:|| .|::||:.|.:  :...|.:..|||.. |||......    
Zfish   617 QNPKGTTSKFIVSVWAFFAVIFL-ASYTANLAAFMIQEEFVDQVTGLSDKKFQSPYSYSPP---- 676

  Fly   498 NKIYFTESTDP-------VTKNL-----YHKKIASKGENIYMRPLLGMEKMRTGLFAYQ------ 544
                |...|.|       :.||.     |..|....|.|   ..|:.::..:...|.|.      
Zfish   677 ----FRFGTVPNGSTERNIRKNYPDMHQYMVKYHQTGVN---DALVSLKTGKLDAFIYDAAVLNY 734

  Fly   545 ----------VELQAGYQIVSDTFSEPEKCGLMELEPFQLPMLAIPTRKNFPYKELIRRQLRWQR 599
                      |.:.:||...:..:....:.|.:...|..|.:|||     ....|:...:.:|. 
Zfish   735 MAGRDEGCKLVTIGSGYIFATTGYGIALQKGSLWKRPVDLAILAI-----IGDGEMEELEAQWL- 793

  Fly   600 EVSLVNREERKWIPQKPKCEGGVGGFVSIGITECRYALGIFGCGAAVSFVLFLFEFIF 657
             ..:.:.|:.:.:..:...:...|.|..:..     |:|:       |.:.|::|.:|
Zfish   794 -TGICHNEKNEVMSSQLDVDNMAGVFYMLAT-----AMGL-------SLITFVWEHLF 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 44/205 (21%)
Lig_chan 388..644 CDD:278489 60/304 (20%)
grin2aaXP_021329529.1 PBP1_iGluR_NMDA_NR2 33..389 CDD:107373 14/62 (23%)
PBP2_iGluR_NMDA_Nr2 400..799 CDD:270436 79/432 (18%)
NMDAR2_C 836..1460 CDD:313729 1/3 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591440
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

Return to query results.
Submit another query.