DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and grik2

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:XP_021322472.1 Gene:grik2 / 556013 ZFINID:ZDB-GENE-080414-1 Length:908 Species:Danio rerio


Alignment Length:657 Identity:134/657 - (20%)
Similarity:265/657 - (40%) Gaps:105/657 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 MLVAYYRHHGVHSLMLVVCHTDIADFRLWKLWQHFNLNNFYVQVSTESSLRDLQHVDALDEHKDA 113
            |:..|| |:...:|.|..  .|:..:|    :...|:..|.:..:..|.:..:....:::..:..
Zfish   247 MMTEYY-HYIFTTLDLFA--LDVEPYR----YSGVNMTGFRILNTENSQVSSIIEKWSMERLQAP 304

  Fly   114 PPPKSFHANNSTHWETSFLLPALPYKMGILLLEFSSECALNLLRWSAASEHNYFTTNRFWLLLTE 178
            |.|.|...:.....:.:.:..|:  .:..:.::.|.:..::.|:.:......:  .|||..|:.|
Zfish   305 PKPDSGLLDGFMTTDAALMYDAV--HVVAVAVQQSPQITVSSLQCNRHKPWRF--GNRFMTLIKE 365

  Fly   179 D-----PGDIDLLEDPEIFIPPDSELRVLHYENVGNFSCSLIDLYKVAAWKPLKRTLVGHNIRNS 238
            .     .|.|:.  :....:..|.:|.|:..:..|        |.|:..|.|..    |.|:..:
Zfish   366 AHWDGLTGRINF--NRTNGLRTDFDLDVISLKEEG--------LEKIGTWDPAS----GLNMTEN 416

  Fly   239 RHVIHALQHFGSAITYRQDLEGIVFNSAIVIAFPDLFTNIEDLSLRHIDTISKVNHRLMLELANR 303
            :.        |........|.......:.::..|.:.....|..|...|........|:.|||..
Zfish   417 QK--------GKTANVTDSLSNRSLVVSTILEEPYVMFKKSDKPLYGNDRFEGYCVDLLRELAAI 473

  Fly   304 LNMSY--NTYQTVNYGWR-QPNGSFDGLMGRFQRYELDLAQLAIFMRLDRIALVDFVAETYRVRA 365
            |...|  ...:...||.: :.:|.::|::.....::.|||...:.:...|..::||......:..
Zfish   474 LGFGYELRLVEDGRYGAQDESSGQWNGMVRELMDHKADLAVAPLAITYVREKVIDFSKPFMTLGI 538

  Fly   366 GIMFRQPPLSAVANIFAM--PFENDVWVSILMLLI-ITTVVLVLELF-----FSPH--NHDMSYM 420
            .|::|:|. .....:|:.  |...|:|:.||:..: ::.|:.|:..|     ::||  |.|...:
Zfish   539 SILYRKPN-GTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVV 602

  Fly   421 DT----LNFVW---GAMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSFSANIVALL-----QSP 473
            :.    ||..|   ||:.|||..:..:..|.||:....:...|.:.:|::||:.|.|     :||
Zfish   603 ENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESP 667

  Fly   474 SDAIQSLSDLGQSPLEIGVQDTQYNKIYFTESTDPVTKNLYHKKIASKGENIYMRPL-LGMEKMR 537
            .|:...|:.  |:.:|.||.:......:| :.|...|.:...:.::|:..::.::.: .|:|::.
Zfish   668 IDSADDLAK--QTKIEYGVVEDGSTMTFF-KKTKISTYDKMWEFMSSRRHSVMVKSIEEGIERVL 729

  Fly   538 TGLFAYQVELQAGYQIVSDT--FSEPEKC------GLMELEPFQLPMLAIPTRKNFPYKELIR-R 593
            |..:|:.:|        |.|  |.....|      ||::.:.:     .:.|....||::.|. .
Zfish   730 TSDYAFLME--------STTIEFVTQRNCNLTQIGGLIDSKAY-----GVGTPMGSPYRDKITIA 781

  Fly   594 QLRWQREVSLVNREERKW----IPQKPKCEGGVGGFVSIGITECRYALGIF---GCGAAVSFVLF 651
            .|:.|.|..|...:|:.|    .|::...|....|..:||        |||   ..|..:|..:.
Zfish   782 ILQLQEEGKLHMMKEKWWRGNGCPEEENKEASALGVQNIG--------GIFIVLAAGLVLSVFVA 838

  Fly   652 LFEFIFR 658
            :.||:::
Zfish   839 VGEFLYK 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 52/208 (25%)
Lig_chan 388..644 CDD:278489 69/292 (24%)
grik2XP_021322472.1 PBP1_iGluR_Kainate 37..414 CDD:380605 34/191 (18%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:419667 85/386 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591562
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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