DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and Gria1

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_113796.1 Gene:Gria1 / 50592 RGDID:621531 Length:907 Species:Rattus norvegicus


Alignment Length:415 Identity:96/415 - (23%)
Similarity:178/415 - (42%) Gaps:54/415 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 LMLELANRLNMSYNTYQTVN---YGWRQPN-GSFDGLMGRFQRYELDLAQLAIFMRLDRIALVDF 356
            |..|:|..:..||. .:.|:   ||.|.|: .:::|::|.......|:|...:.:.|.|..::||
  Rat   442 LAAEIAKHVGYSYR-LEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDF 505

  Fly   357 VAETYRVRAGIMFRQPPLSAVANIFAM--PFENDVWVSILMLLIITTVVLVLELFFSPH------ 413
            ......:...||.::|..|. ..:|:.  |...::|:.|:...|..:|||.|...|||:      
  Rat   506 SKPFMSLGISIMIKKPQKSK-PGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEE 569

  Fly   414 ------------NHDMSYMDTLNFVWGAMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSFSANI 466
                        :::....::|.|..||..|||..:..|:.|.||:....:...|.:.:|::||:
  Rat   570 FEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANL 634

  Fly   467 VALLQ-----SPSDAIQSLSDLG-QSPLEIGVQDTQYNKIYFTESTDPVTKNLYHKKIASKGENI 525
            .|.|.     ||   |:|..||. |:.:..|..:....|.:|..|...|.:.:: ..:.|...::
  Rat   635 AAFLTVERMVSP---IESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMW-TYMKSAEPSV 695

  Fly   526 YMRPL-LGMEKMR--TGLFAYQVELQAGYQIVSDTFSEPEKCGLMEL-EPFQLPMLAIPTRKNFP 586
            ::|.. .||.::|  .|.:||.:|     ..:::...:.:.|..|:: .........|.|.|...
  Rat   696 FVRTTEEGMIRVRKSKGKYAYLLE-----STMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSA 755

  Fly   587 YKELIRRQLRWQREVSLVNREERKWIPQKPKCEGGVGGFVSIGITECRYALGIFGC------GAA 645
            .:..:...:....|..|:::.:.||...|.:|  |.||..|...|.......:.|.      |..
  Rat   756 LRNPVNLAVLKLNEQGLLDKLKNKWWYDKGEC--GSGGGDSKDKTSALSLSNVAGVFYILIGGLG 818

  Fly   646 VSFVLFLFEFIFRHFKQVYRIIKGY 670
            ::.::.|.||.::...:..| :||:
  Rat   819 LAMLVALIEFCYKSRSESKR-MKGF 842

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 54/212 (25%)
Lig_chan 388..644 CDD:278489 65/289 (22%)
Gria1NP_113796.1 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 82/355 (23%)
Glutamate binding. /evidence=ECO:0000250 492..494 0/1 (0%)