DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and Nmdar1

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster


Alignment Length:423 Identity:83/423 - (19%)
Similarity:166/423 - (39%) Gaps:97/423 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 LMLELANRLNMSYNTY-----QTVNYGWRQPNGS------FDGLMGRFQRYELDLAQLAIFMRLD 349
            |::||:.|:|.:|:..     |..:|..|...|:      :.||:|.......|:....:.:..:
  Fly   472 LLIELSKRINFTYDLALSPDGQFGHYILRNNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPE 536

  Fly   350 RIALVDFVAETYRVRA-GIMFRQPPLSAVANIFAMPFENDVWVSILMLLIITTVVLVLELFFSPH 413
            |...::| ::.::.:. .|:.::|..|:....|..||.|.:|:.:::.:.:..:||.|...|||.
  Fly   537 RAEYIEF-SKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPF 600

  Fly   414 NH-DMSYMDT-----LN------FVWGAMCQQGFYVEV-RNRSARIIVFTTFVAALFLFTSFSAN 465
            .. .:|:.|:     ||      |.||.:...|..... |:.|||::.......|:.:..|::||
  Fly   601 GRFKLSHSDSNEEKALNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTAN 665

  Fly   466 IVA--LLQSPSDAIQSLSDLGQSPLEIGVQDTQYN-----------KIYFTESTDPVTKNLYHKK 517
            :.|  :|:.|...:..::|       ..:::|..|           .:||....:  ..|:|...
  Fly   666 LAAFLVLERPKTKLSGIND-------ARLRNTMENLTCATVKGSSVDMYFRRQVE--LSNMYRTM 721

  Fly   518 IASKGENIYMRPLLGMEKMRTG-LFAY-----QVELQAGYQIVSDTFSEPEKCGLMEL-EPFQLP 575
            .|    |.|......::.::.| |.|:     ::|.:|.           :.|.|:.. |.|...
  Fly   722 EA----NNYATAEQAIQDVKKGKLMAFIWDSSRLEYEAS-----------KDCELVTAGELFGRS 771

  Fly   576 MLAIPTRKNFPYKELIRRQLRWQREVSLVNREERKWI---------------PQKPKCEGGVGGF 625
            ...|..:|..|:.:.:...:....|...:.:.:::||               |.....:...|.|
  Fly   772 GYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHGHVQQNCELFEKTPNTLGLKNMAGVF 836

  Fly   626 VSIGITECRYALGIFGCGAAVSFVLFLFEFIFR 658
            :.:|:            |.|....|.:.|.|::
  Fly   837 ILVGV------------GIAGGVGLIIIEVIYK 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 48/210 (23%)
Lig_chan 388..644 CDD:278489 55/303 (18%)
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374
ANF_receptor 58..371 CDD:279440
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 74/370 (20%)
HisJ 451..>558 CDD:223904 17/86 (20%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 30/135 (22%)
Lig_chan 575..838 CDD:278489 54/286 (19%)
CaM_bdg_C0 854..882 CDD:287524 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462965
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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