DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and gria4b

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_997917.2 Gene:gria4b / 336069 ZFINID:ZDB-GENE-030131-8013 Length:904 Species:Danio rerio


Alignment Length:700 Identity:129/700 - (18%)
Similarity:252/700 - (36%) Gaps:162/700 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 FYVQVSTESSLRDLQHVDALDEHKDAPPPKSFHANNSTHWETSFLLPALPYK------------- 139
            |.:.:..|.....|:.:.::.:|     .|.:|          :::..|.:|             
Zfish   209 FVIDLEAERLNNMLEQIVSVGKH-----VKGYH----------YIMANLGFKDINLERFMHGGAN 258

  Fly   140 -MGILLLEFSSECALNLL-RWSAASEHNYFTTNRFWLLLTEDPGDIDLLEDPEIFIPPDSELRVL 202
             .|..|::||:...:.|: ||:...:..|             ||.          ..|......|
Zfish   259 VTGFQLVDFSNPMVIKLMQRWNKLDQREY-------------PGS----------DAPPKYTSAL 300

  Fly   203 HYENV-------GNFSCSLIDLYK-----------VAAWK---PLKRTLVGHNIRNSRHVIHALQ 246
            .|:.|       .|.....:|:.:           .|.|.   .::|||...:::.....:. ..
Zfish   301 TYDGVMVMAEAFRNLRRQKVDISRRGIAGDCLANPAAPWNQGIDMERTLKQVHLQGLTGNVQ-FD 364

  Fly   247 HFGSAITYRQDLEGIVFNSAIVIAF---PDLFTNIEDLSLRHIDTISKVNHRLML---------- 298
            |:|..:.|..|:..:..|....|.:   .|.....:|.:|...:|....|..:::          
Zfish   365 HYGRRVNYTMDVFELKSNGPRRIGYWNDADKLVLTQDHALLPNETSGMENRTVIVTTIMEGPYVM 429

  Fly   299 -----------------------ELANRLNMSY--NTYQTVNYGWRQPNGS-FDGLMGRFQRYEL 337
                                   |:|..:...|  :......||.|.|... ::|::|.....:.
Zfish   430 LKKNWEMYEGNEQYEGYCVDLASEIAKHIGFKYKISIVPDGKYGARDPETKIWNGMVGELVYGKA 494

  Fly   338 DLAQLAIFMRLDRIALVDFVAETYRVRAGIMFRQPPLSAVANIFAM--PFENDVWVSILMLLIIT 400
            ::|...:.:.|.|..::||......:...||.::|..|. ..:|:.  |...::|:.|:...|..
Zfish   495 EIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSK-PGVFSFLDPLAYEIWMCIVFAYIGV 558

  Fly   401 TVVLVLELFFSPHN-------------------HDMSYMDTLNFVWGAMCQQGFYVEVRNRSARI 446
            :|||.|...|||:.                   ::....::|.|..||..|||..:..|:.|.||
Zfish   559 SVVLFLVSRFSPYEWHTEEPEEGTDGLPSDQPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRI 623

  Fly   447 IVFTTFVAALFLFTSFSANIVALLQ-----SPSDAIQSLSDLG-QSPLEIGVQDTQYNKIYFTES 505
            :....:...|.:.:|::||:.|.|.     ||   |:|..||. |:.:..|..|:...|.:|..|
Zfish   624 VGGVWWFFTLIIISSYTANLAAFLTVERMVSP---IESAEDLAKQTDIAYGTLDSGSTKEFFRRS 685

  Fly   506 TDPVTKNLYHKKIASKGENIYMRPLL-GMEKMR--TGLFAYQVELQAGYQIVSDTFSEPEK-CGL 566
            ...|.:.:: ..:.|....::.:... |:.::|  .|.:|:.:|      ...:.::|..| |..
Zfish   686 KIAVYEKMW-SYMKSAEPTVFTKTTAEGVARVRKSKGKYAFLLE------STMNEYTEQRKPCDT 743

  Fly   567 MEL-EPFQLPMLAIPTRKNFPYKELIRRQLRWQREVSLVNREERKWIPQKPKCEGGVGG-----F 625
            |:: .........:.|.|....:..:...:....|..|:::.:.||...|.:|..|.||     .
Zfish   744 MKVGGNLDSKGYGVATPKGSQLRSAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGGEKDKSS 808

  Fly   626 VSIGITECRYALGIFGCGAAVSFVLFLFEFIFRHFKQVYRIIKGYREVQR 675
            .::.::.......|...|..::.::.|.||.::...:..|:...:.|..|
Zfish   809 QALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRNEAKRMKLTFTEAMR 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 51/212 (24%)
Lig_chan 388..644 CDD:278489 62/290 (21%)
gria4bNP_997917.2 Periplasmic_Binding_Protein_Type_1 28..398 CDD:324556 36/227 (16%)
PBP2_iGluR_AMPA_GluR4 414..793 CDD:270445 77/389 (20%)
Lig_chan 546..827 CDD:306551 62/290 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591539
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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