DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and Grik1

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_001104587.1 Gene:Grik1 / 29559 RGDID:2732 Length:949 Species:Rattus norvegicus


Alignment Length:672 Identity:136/672 - (20%)
Similarity:254/672 - (37%) Gaps:142/672 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 YRHHGVHSLMLVVCHTDIADFRLWKLWQHFNLNNFYVQVSTES-SLRDLQHVDALDEHKDAPP-P 116
            ||:.||          ::..|||      .|::|.:|....|. |:..||          ||| |
  Rat   270 YRYSGV----------NMTGFRL------LNIDNPHVSSIIEKWSMERLQ----------APPRP 308

  Fly   117 KSFHANNSTHWETSFLLPALPYKMGIL------LLEFSSEC-----------ALNLL---RWSAA 161
            ::...:.....|.:.:..|: |.:.|.      |...|.:|           .:||:   ||.. 
  Rat   309 ETGLLDGMMTTEAALMYDAV-YMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDG- 371

  Fly   162 SEHNYFTTNRFWLLLTEDPGDIDLLEDPEIFIPPDSELRVLHYENVGNFSCS---LIDLYKVAAW 223
                  .|.|.....|:.             :..|.:|.::..:..|....|   ...||||  |
  Rat   372 ------LTGRITFNKTDG-------------LRKDFDLDIISLKEEGTEKASGEVSKHLYKV--W 415

  Fly   224 KPL-------KRTLVGHNIRNSRHVIHALQHFGSAITYRQDLEGIVFNSAIVIAFPDLFTNIEDL 281
            |.:       ...:...|...|.::..:|.:....:|             .::..|.:.....|.
  Rat   416 KKIGIWNSNSGLNMTDGNRDRSNNITDSLANRTLIVT-------------TILEEPYVMYRKSDK 467

  Fly   282 SLRHIDTISKVNHRLMLELANRLNMSYNTYQTVN--YGWRQPNGSFDGLMGRFQRYELDLAQLAI 344
            .|...|........|:.||:|.|...|:.....:  ||.:...|.::|::.....:..|||...:
  Rat   468 PLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPL 532

  Fly   345 FMRLDRIALVDFVAETYRVRAGIMFRQPPLSAVANIFAM--PFENDVWVSILMLLI-ITTVVLVL 406
            .:...|..::||......:...|::|:|. .....:|:.  |...|:|:.:|:..: ::.|:.|:
  Rat   533 TITYVREKVIDFSKPFMTLGISILYRKPN-GTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVI 596

  Fly   407 ELF-----FSPH--NHDMSYMDT----LNFVW---GAMCQQGFYVEVRNRSARIIVFTTFVAALF 457
            ..|     ::||  |.|...::.    ||..|   ||:.|||..:..:..|.||:....:...|.
  Rat   597 ARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLI 661

  Fly   458 LFTSFSANIVALL-----QSPSDAIQSLSDLGQSPLEIGVQDTQYNKIYFTESTDPVTKNLYHKK 517
            :.:|::||:.|.|     :||.|:...|:.  |:.:|.|.........:|.:|.....:.::...
  Rat   662 IISSYTANLAAFLTVERMESPIDSADDLAK--QTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFM 724

  Fly   518 IASKGENIYMRPLLGMEKMRTGLFAYQVELQAGYQIVSDTFSEPEKCGLMELEPFQLPMLAIPTR 582
            .:.:...:......|::::.|..:|..:|..:...:.....:..:..||::.:.:     .:.|.
  Rat   725 SSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGY-----GVGTP 784

  Fly   583 KNFPYKELIR-RQLRWQREVSLVNREERKW----IPQKPKCEGGVGGFVSIGITECRYALGIF-- 640
            ...||::.|. ..|:.|.|..|...:|:.|    .|::...|....|..:||        |||  
  Rat   785 IGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDSKEASALGVENIG--------GIFIV 841

  Fly   641 -GCGAAVSFVLFLFEFIFRHFK 661
             ..|..:|..:.:.||:::..|
  Rat   842 LAAGLVLSVFVAIGEFLYKSRK 863

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 51/207 (25%)
Lig_chan 388..644 CDD:278489 60/283 (21%)
Grik1NP_001104587.1 Periplasmic_Binding_Protein_Type_1 35..430 CDD:299141 42/208 (20%)
ANF_receptor 53..396 CDD:279440 34/172 (20%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:304360 77/389 (20%)
Glutamate binding 531..533 0/1 (0%)
Lig_chan 577..846 CDD:278489 60/283 (21%)