DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and GRIA1

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens


Alignment Length:415 Identity:96/415 - (23%)
Similarity:178/415 - (42%) Gaps:54/415 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 LMLELANRLNMSYNTYQTVN---YGWRQPN-GSFDGLMGRFQRYELDLAQLAIFMRLDRIALVDF 356
            |..|:|..:..||. .:.|:   ||.|.|: .:::|::|.......|:|...:.:.|.|..::||
Human   452 LAAEIAKHVGYSYR-LEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDF 515

  Fly   357 VAETYRVRAGIMFRQPPLSAVANIFAM--PFENDVWVSILMLLIITTVVLVLELFFSPH------ 413
            ......:...||.::|..|. ..:|:.  |...::|:.|:...|..:|||.|...|||:      
Human   516 SKPFMSLGISIMIKKPQKSK-PGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEE 579

  Fly   414 ------------NHDMSYMDTLNFVWGAMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSFSANI 466
                        :::....::|.|..||..|||..:..|:.|.||:....:...|.:.:|::||:
Human   580 FEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANL 644

  Fly   467 VALLQ-----SPSDAIQSLSDLG-QSPLEIGVQDTQYNKIYFTESTDPVTKNLYHKKIASKGENI 525
            .|.|.     ||   |:|..||. |:.:..|..:....|.:|..|...|.:.:: ..:.|...::
Human   645 AAFLTVERMVSP---IESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMW-TYMKSAEPSV 705

  Fly   526 YMRPL-LGMEKMR--TGLFAYQVELQAGYQIVSDTFSEPEKCGLMEL-EPFQLPMLAIPTRKNFP 586
            ::|.. .||.::|  .|.:||.:|     ..:::...:.:.|..|:: .........|.|.|...
Human   706 FVRTTEEGMIRVRKSKGKYAYLLE-----STMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSA 765

  Fly   587 YKELIRRQLRWQREVSLVNREERKWIPQKPKCEGGVGGFVSIGITECRYALGIFGC------GAA 645
            .:..:...:....|..|:::.:.||...|.:|  |.||..|...|.......:.|.      |..
Human   766 LRNPVNLAVLKLNEQGLLDKLKNKWWYDKGEC--GSGGGDSKDKTSALSLSNVAGVFYILIGGLG 828

  Fly   646 VSFVLFLFEFIFRHFKQVYRIIKGY 670
            ::.::.|.||.::...:..| :||:
Human   829 LAMLVALIEFCYKSRSESKR-MKGF 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 54/212 (25%)
Lig_chan 388..644 CDD:278489 65/289 (22%)
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..399 CDD:107385
ANF_receptor 47..382 CDD:279440
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 82/355 (23%)
Lig_chan 548..827 CDD:278489 65/289 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156049
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.840

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