DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and Grin3a

DIOPT Version :10

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_612555.1 Gene:Grin3a / 191573 RGDID:621704 Length:1135 Species:Rattus norvegicus


Alignment Length:576 Identity:109/576 - (18%)
Similarity:202/576 - (35%) Gaps:143/576 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 ASEHNYFTTNRFWLLLTEDP--------------GDIDLLEDPEIFIPPDSELRVLHYENVGNFS 211
            :||:|:|..|     |..||              |.|  :.|..|: |..::....|:::.....
  Rat   458 SSENNFFIWN-----LQHDPMGKPMWTRLGSWQGGRI--VMDSGIW-PEQAQRHKTHFQHPNKLH 514

  Fly   212 CSLIDLYKVAAWKPLKRTLVGHNIRNSRHVIHALQHFGSAITYRQDLEGIVFNSAIVIAFPDLFT 276
            ..::             ||:.|....:|.|               |.||:.....:.:   |..|
  Rat   515 LRVV-------------TLIEHPFVFTREV---------------DDEGLCPAGQLCL---DPMT 548

  Fly   277 NIEDLSLRHIDTISKVNHR---------------LMLELANRLNMSYNTYQTVN--YG-WRQPNG 323
            |...:..|...::...|..               |:.:||..:|..::.|...:  || |:  ||
  Rat   549 NDSSMLDRLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWK--NG 611

  Fly   324 SFDGLMGRFQRYELDLAQLAIFMRLDRIALVDFVAETYRVRAGIMFRQPPLSAVANIFAMPFEND 388
            .:.||:|.......::|..:..:...|..::||.:..:....||:.|....:|....|..|....
  Rat   612 HWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAFMWPLHWT 676

  Fly   389 VWVSILMLLIITTVVLVLELFFSP---------HNHDMSYMDTLNFVWGAMCQQGFYVEVRNRSA 444
            :|:.|.:.|.||.:.|.|..:.||         .|...|:...||     :|    |..:..|:|
  Rat   677 MWLGIFVALHITAIFLTLYEWKSPFGMTPKGRNRNKVFSFSSALN-----VC----YALLFGRTA 732

  Fly   445 ----------RIIVFTTFVAALFLFTSFSANIVALLQSPSDAIQSLSDLGQSPLEIGVQDTQYNK 499
                      |.::....:..:|..::::||:.|::.. ....:.||.:....|....|..::..
  Rat   733 AIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVG-EKIYEELSGIHDPKLHHPSQGFRFGT 796

  Fly   500 IYFTESTDPVTKNLYHKKIASKGENIYMRPLLGMEKMRT------------GLFAYQVELQAGYQ 552
            :..:.:.|.|.::........:..|:...| .|::.::.            .|..|:|.:.|   
  Rat   797 VRESSAEDYVRQSFPEMHEYMRRYNVPATP-DGVQYLKNDPEKLDAFIMDKALLDYEVSIDA--- 857

  Fly   553 IVSDTFSEPEKCGLMEL-EPFQLPMLAIPTRKNFPYKELIRRQLRWQREVSLVNREERKWIPQKP 616
                      .|.|:.: :||.:....|....|.|....|...:...:....::....||....|
  Rat   858 ----------DCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKVVP 912

  Fly   617 KCEGGVGGFVSIGITE-----CRYALGIFGCGAAVSFVLFLFEFIFRHFKQVYRII 667
             |     |..|..:||     .::..|:|.. ..:.|.|.:...|..|.  |:|::
  Rat   913 -C-----GKRSFAVTETLQMGIKHFSGLFVL-LCIGFGLSILTTIGEHI--VHRLL 959

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>372 CDD:473866 19/75 (25%)
Lig_chan 386..643 CDD:459656 53/293 (18%)
Grin3aNP_612555.1 PBP1_iGluR_NMDA_NR3 40..496 CDD:380600 11/44 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 60..117
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 80/452 (18%)
Lig_chan 674..941 CDD:459656 53/297 (18%)
PPP2CB binding site. /evidence=ECO:0000269|PubMed:11588171 951..987 3/11 (27%)
GIT1-binding. /evidence=ECO:0000269|PubMed:24297929 1082..1115
Blue background indicates that the domain is not in the aligned region.

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