DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and glr-6

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_741822.2 Gene:glr-6 / 180955 WormBaseID:WBGene00001617 Length:844 Species:Caenorhabditis elegans


Alignment Length:518 Identity:104/518 - (20%)
Similarity:199/518 - (38%) Gaps:116/518 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 DSELRVLHYENVGNFSCSL-IDLYKVAAWKPLKR-TLVGHNIRNSRHVIHALQHFGSAITYRQDL 258
            |||   ||...:|.....| ..::| :.|:..|. |::..||..:.      :|:.:::...:.|
 Worm   357 DSE---LHIWEMGITGAGLHTGIWK-STWEGSKELTMLAKNIPGTH------EHYQASVRESRTL 411

  Fly   259 EGIVFNSAIVIAFPDLFTNIED--LSLRHIDTISKVNHR-----LMLELANRLNMSYNTYQTV-- 314
            :               .|:|.:  ..:..|....::.|.     |:.:||..|:.:| |.:.|  
 Worm   412 K---------------VTSIHEKPYVIEKIMPDGRIKHEGFCVDLLDKLAEMLHFNY-TLKIVKD 460

  Fly   315 -NYGWRQPNGS--FDGLMGRFQRYELDLAQLAIFMRLDRIALVDFVAETYRVRAGIMFRQPPLSA 376
             .||.|: ||:  :||::|...|.:.|:|...|.:...|:.::||.....::...::.|||...:
 Worm   461 NKYGERK-NGTDEWDGMIGEILRGDADMAVAPITVTATRLEVIDFTDPFLQLGISMLMRQPNPKS 524

  Fly   377 VANI--FAMPFENDVWVSILMLLIITTVVLVLELFFSPHNHDMSYMDTLNFVW-----------G 428
            .:::  |..|....||....:..:||.:::.:....||......: ...|.||           |
 Worm   525 SSSLTRFLWPLSASVWTFSAIATVITALLVTVAAVLSPKESTAEF-KIQNSVWYLVCILLRAGSG 588

  Fly   429 AMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSFSANIVALL--QSPSDAIQSLSDLGQSPLEIG 491
            ..||.|        :.|:|....:...|.|...::||..|||  ...|....|..:||       
 Worm   589 YNCQAG--------ATRLISAVWWSFTLVLIAQYTANFAALLTVDRKSMPFNSFEELG------- 638

  Fly   492 VQDTQYN---------KIYFTESTDPVTKNLYHKKIASKGENIYMRPLLGMEKMRTGLFAYQVE- 546
             ..|:||         ..:|..|.....:.|:.:..:::..........|:.::....:.:.:| 
 Worm   639 -NQTEYNFGSILGGSTMQFFKYSRIETFRRLWERMQSAEPSAFVGTNHEGVNRVLNEKYVFLMES 702

  Fly   547 LQAGYQIVSDTFSEPEKCGLMELEPFQLP----MLAIPTRKNFPYKELIRRQLRWQREVSLVNRE 607
            ....||:.       :.|.|..:....|.    .:|:|  |...::|.:.||:....|..::...
 Worm   703 ATLDYQVT-------QNCNLTRVGNVVLGSNGYSIALP--KGSKWREKLTRQILDLNEKGIILML 758

  Fly   608 ERKWIPQ-KPKCEGGVGGFVSIGITECRYALG---IFG------CGAAVSFVLFLFE---FIF 657
            :..|..: :.:|:       |....:.:.|||   ::|      .|:.:..:..:.|   |||
 Worm   759 KNNWWKKSQQECQ-------SSEPEDLQTALGAENVYGLFLLLALGSGIGVLCAVLEHTHFIF 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 50/203 (25%)
Lig_chan 388..644 CDD:278489 53/292 (18%)
glr-6NP_741822.2 PBP1_iGluR_non_NMDA-like 21..394 CDD:380591 11/40 (28%)
PBP2_iGluR_Kainate 409..764 CDD:270432 79/397 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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