DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75d and glr-4

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_001254126.1 Gene:glr-4 / 174258 WormBaseID:WBGene00001615 Length:951 Species:Caenorhabditis elegans


Alignment Length:857 Identity:164/857 - (19%)
Similarity:310/857 - (36%) Gaps:237/857 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LPLIFFLLVS--------GTPRVAGSWRSEYSRQDPDPKTRWGNQLPDMLVAYYRHHGVH----- 60
            |.:||::..|        ||....||:..|:.|...|   ||..:           ||.|     
 Worm    14 LLVIFYIANSAADDRFHIGTIANRGSFAYEHLRYAID---RWNTE-----------HGAHTQIKF 64

  Fly    61 SLMLVVCHTDIADFRLWKLWQHFNLNNFYVQVSTESSLRDLQHVDALDEHKDAP----------- 114
            |::..:.:.:..:.|:.::.|.   ....|.:|.|.|.:|.|.:.::..:.:.|           
 Worm    65 SIVSPIRYDNNYEERMCEIMQQ---GIVAVVLSNEESEQDSQLIKSMCHYFNIPCLSLQSTSLRD 126

  Fly   115 ----------PPKSFHAN------NSTHWETSFLL------------PALPYK-----------M 140
                      |.:...|.      :|..| |.|||            |.:.||           :
 Worm   127 SVSDFVTLLGPSRGAGARATSEFLDSMRW-TGFLLAYQHGSDLEDLSPLMQYKQIVDTGGRRIHI 190

  Fly   141 GILLLEFSS---ECALNLLRWSAASEHNYFTTNRFWLL--LTEDPGDIDLLEDPEIFIPPDSELR 200
            .|..|..::   |..|..::......:....:|...:|  |.:....:::.|.|..::..:::|.
 Worm   191 KIRRLPNNTDDYEPFLKYVKTRLKQTNIIIHSNNITVLYNLLQQARGLNMAEPPFSYVFTNTDLS 255

  Fly   201 VLH--YENV--GNFSCSLIDLYKVAAWKPLKRT----------LVGHNIRNSRHVIHALQHFGSA 251
            :|.  ..|:  .:|.|::..|..|.. .|:.:|          :||.:|...|.:.||.:. .|.
 Worm   256 LLEDFLNNMYGASFHCNITGLQLVKN-DPMMKTQLALTSEAVYVVGMSIYRMRELGHAPRQ-SSI 318

  Fly   252 ITYRQDL--EGIVFNSAI-----------VIAFP------------------------------- 272
            :....|:  :|.:.|..|           .:.|.                               
 Worm   319 MCDSHDIWSDGRIMNEGIRKLKLRNQLTGDVQFKSNGERDDIMYHGVGRINSQFVKLGNWSEKRG 383

  Fly   273 -------------DLFTNIEDLSLRHIDTISKVNH----------------RLMLELANRLNMSY 308
                         |:..:.|||...|:..:..:..                .|:.|:...|..:|
 Worm   384 WNFDSRYANRWEFDIDPDSEDLEGLHLRVVVYLEEPFVIKTGENQYEGFCIDLLNEMTQVLKFNY 448

  Fly   309 N--TYQTVNYGWRQPNGSFDGLMGRFQRYELDLAQLAIFMRLDRIALVDFVAETYRVRAGIMFRQ 371
            .  ..|...||....:|.::|::|..||:|.||:..|:.:...|..:|||......:...|:..:
 Worm   449 TIIEVQDGTYGIEDESGRWNGIIGALQRHEADLSLSAVTITYSRAEVVDFTLPFMHLGISILLAR 513

  Fly   372 PPLSAVAN---IFAMPFENDVWVSILMLLIITTVVLVLELFFSPHN-HDMSYMD----------- 421
            ........   .|..|....||:|:|:...|.:..:.:...|||:. :::..:|           
 Worm   514 TSEETDKGSLWTFLEPLSLTVWISLLISYCIVSYSMHILAKFSPYEWYNLERIDERDFENIKNQK 578

  Fly   422 ----TLNFVW---GAMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSFSANIVALL--QSPSDAI 477
                .||..|   |::.|||..|..|..:.|:|....::....:.:|::|.:.|.|  :..|..|
 Worm   579 NQFTVLNSFWFTMGSLMQQGSDVIPRAAATRLIAVVWWMFTQIIISSYTAQLAAFLTVERMSTPI 643

  Fly   478 QSLSDL-GQSPLEIGVQDTQYNKIYFTESTDPVTKNLYHKKIASKGENIYMRPLL-GMEKMRTGL 540
            :|..|| .|..:..||..:.....:|.||..|:.:.:: ..:.|....:::.... |:.::::|.
 Worm   644 ESTQDLANQQKIRYGVLKSGSTMDFFRESKIPMYERMW-SVMESSSPGVFVNSSREGIARVKSGG 707

  Fly   541 FAYQVE-LQAGYQIVSDTFSEPEKC------GLMELEPFQLPMLAIPTRKNFPYKELIRRQLRWQ 598
            :||.:| ....|.:..|       |      ||::.:.:.   :|:|  |..|.::::.|.:...
 Worm   708 YAYMMESSMLEYYLERD-------CELQSIGGLLDSKGYG---IALP--KGSPLRDILSRTVLQL 760

  Fly   599 REVSLVNREERKWIPQK---PKCEGGVGGFVSIGITECRYALGIFG------CGAAVSFVLFLFE 654
            :|.:::...:.||...:   |.|    |...|...|..: ...|||      .|..|:|:|...|
 Worm   761 QERTILEALKNKWWRDRREGPSC----GPPPSEKATNSK-PQNIFGIFYVLLTGLIVAFLLACGE 820

  Fly   655 FIFRHFKQVYRI 666
            :......:.:|:
 Worm   821 YCIESRHEAFRL 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 49/209 (23%)
Lig_chan 388..644 CDD:278489 63/294 (21%)
glr-4NP_001254126.1 PBP1_iGluR_Kainate 30..385 CDD:107377 63/374 (17%)
ANF_receptor 45..365 CDD:279440 58/339 (17%)
Periplasmic_Binding_Protein_Type_2 410..775 CDD:304360 78/377 (21%)
Lig_chan 533..810 CDD:278489 63/294 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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