DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75d and gria2b

DIOPT Version :9

Sequence 1:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster
Sequence 2:XP_005157361.1 Gene:gria2b / 170451 ZFINID:ZDB-GENE-020125-4 Length:897 Species:Danio rerio


Alignment Length:786 Identity:163/786 - (20%)
Similarity:285/786 - (36%) Gaps:206/786 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 GNQ------LPDM------LVAYYR----------HHGVHSLMLVVCHTDIADFRLWKLWQHFNL 85
            |||      .||:      |:.||:          ..|:.:|.:|:   |.|..:.|:: ...|:
Zfish   119 GNQQFIIQMRPDIKGPLLSLIEYYKWDKFAYLYDSDRGLTTLQVVL---DTAAEKKWQV-TAINV 179

  Fly    86 NNFYVQVSTE---SSLRDLQH-------VDA-LDEHKDAPPP--------KSFH---ANNSTHWE 128
            .|...:...|   |..:||::       :|. .|:.||....        |.:|   ||      
Zfish   180 GNMKDERKDEAYRSLFQDLENKKERRVILDCEQDKVKDIMEQVITIGRHVKGYHYIIAN------ 238

  Fly   129 TSFL---LPALPY----KMGILLLEFSSECALNL-LRWSAASEHNYFTTN---RFWLLLTEDPGD 182
            ..|:   |..:.|    ..|..:::|........ .||.|..|..|...:   |:...||.|.  
Zfish   239 LGFVDGDLSKIQYGGANVSGFQIVDFDDPLVSKFDQRWEALEEKEYPGADSKIRYTSALTYDA-- 301

  Fly   183 IDLLEDPEIFIPPDSELRVLHYENV------GNFSCSLIDLYKVAAWKPLKRTL-------VGHN 234
            :.::.:         ..|.||.:.:      .|..|........|....::|.|       :..|
Zfish   302 VQVMTE---------AFRYLHKQRIDISRRANNGDCLANPAVPWAQGVEIERALKQVRVDGLTGN 357

  Fly   235 IRNSRHVIHALQHFGSAITYRQDLEGIVFNSAIVIAF-----------PDLFTNIEDLSLRH--- 285
            |:        ...:|..:.|..::..:..|.|:.|.:           .|||.| :.:.|.:   
Zfish   358 IQ--------FDQYGKRVNYTVNVMELKSNGAVKIGYWNEVDKMVVTKSDLFPN-DTMGLENKTV 413

  Fly   286 -IDTISKV--------------NHR-------LMLELANRLNMSYNTYQTV---NYGWRQPNGS- 324
             :.||.:.              |.|       |..|:|......|. .:.|   .||.|..... 
Zfish   414 IVTTILEAPYVMLKKNADLFMDNERYEGYCVDLAAEIAKHCGFKYQ-LKIVGDGKYGARDAETKI 477

  Fly   325 FDGLMGRFQRYELDLAQLAIFMRLDRIALVDFVAETYRVRAGIMFRQPPLSAVANIFAM--PFEN 387
            ::|::|.....:.|:|...:.:.|.|..::||......:...||.::|..|. ..:|:.  |...
Zfish   478 WNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSK-PGVFSFLDPLAY 541

  Fly   388 DVWVSILMLLIITTVVLVLELFFSPHN-HDMSYMD-------------TLNFVW---GAMCQQGF 435
            ::|:.|:...|..:|||.|...|||:. |...|.|             ..|.:|   ||..:||.
Zfish   542 EIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEYEDGQIQTNESTNEFGIFNSLWFSLGAFMRQGC 606

  Fly   436 YVEVRNRSARIIVFTTFVAALFLFTSFSANIVALLQ-----SPSDAIQSLSDLG-QSPLEIGVQD 494
            .:..|:.|.||:....:...|.:.:|::||:.|.|.     ||   |:|..||. |:.:..|..|
Zfish   607 DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSP---IESAEDLAKQTEIAYGTLD 668

  Fly   495 TQYNKIYFTESTDPVTKNLYHKKIA--------SKG--ENIYMRPLL-GMEKMR--TGLFAYQVE 546
            :...|.:|..|           |||        .||  .:::::... |:.::|  .|.:||.:|
Zfish   669 SGSTKEFFRRS-----------KIALFDKMWTYMKGAEPSVFVKTTAEGVMRVRKSKGKYAYLLE 722

  Fly   547 LQAGYQIVSDTFSEPEKCGLMEL-EPFQLPMLAIPTRKNFPYKELIRRQLRWQREVSLVNREERK 610
                 ..:::...:.:.|..|:: .........|.|.|....:..:...:....|..|:::.:.|
Zfish   723 -----STMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNK 782

  Fly   611 WIPQKPKCEGGVGGFVSIGITECRYALGIFGC------GAAVSFVLFLFEFIFRHFKQVYRIIKG 669
            |...|.:|  |.||..|...|.......:.|.      |..::.::.|.||.::...:..|:...
Zfish   783 WWYDKGEC--GSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALVEFCYKSRAEAKRMKVT 845

  Fly   670 YREVQR 675
            :.:..|
Zfish   846 FSDAMR 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 54/211 (26%)
Lig_chan 388..644 CDD:278489 69/298 (23%)
gria2bXP_005157361.1 PBP1_iGluR_AMPA_GluR2 27..395 CDD:107384 57/304 (19%)
ANF_receptor 55..377 CDD:279440 54/286 (19%)
PBP2_iGluR_AMPA 410..790 CDD:270433 88/400 (22%)
Lig_chan 542..820 CDD:278489 69/298 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591567
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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