DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6841 and prpf6

DIOPT Version :9

Sequence 1:NP_001303371.1 Gene:CG6841 / 40064 FlyBaseID:FBgn0036828 Length:931 Species:Drosophila melanogaster
Sequence 2:NP_001025642.1 Gene:prpf6 / 595030 XenbaseID:XB-GENE-997713 Length:972 Species:Xenopus tropicalis


Alignment Length:946 Identity:679/946 - (71%)
Similarity:802/946 - (84%) Gaps:20/946 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SNITAAVIA--NRNKKHFLGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPATK- 63
            |.:|||:..  |:.||.|||:|||||||.|:|||||||||||||||||||||..|||||||..: 
 Frog    23 SGLTAAITGTMNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRT 87

  Fly    64 ---RKKKDEEEEEDEDLNDSNYDEFSGYSGSLFSKDPYDKDDEEADAIYDSIDKRMDEKRKEYRD 125
               :.||::.:::||||||:|||||:||:|||||..||:||||||||||.::||||||:|||.|:
 Frog    88 VGDQMKKNQADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRE 152

  Fly   126 RRLREDLERYRQERPKIQQQFSDLKRSLASVTSEEWSTIPEVGDSRNRKQRNPRAEKFTPLPDSL 190
            :|.:|::|:||.||||||||||||||.||.||.|||.:||||||:||::|||||.||.||:|||.
 Frog   153 QREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRHEKLTPVPDSF 217

  Fly   191 ISRNL-GGESSSTLDP------------SSGLASMVPGVATPGMLTP-TGDLDLRKIGQARNTLM 241
            .:::| .|:|.|::||            ..||.:..||..|||::|| |||||:|||||||||||
 Frog   218 FAKHLQTGDSHSSVDPRQTQFGGLNTPFPGGLNTPYPGGMTPGLMTPGTGDLDMRKIGQARNTLM 282

  Fly   242 NVKLSQVSDSVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASA 306
            :::||||||||:||||||||||||||.|||||:||||||||||||||||||||||:|||||||||
 Frog   283 DMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASA 347

  Fly   307 RLEEVTGKVQMARNLIMRGCEMNIQSEDLWLEAARLQPPDTAKAVIAQAARHIPTSVRIWIKAAD 371
            ||||||||:|:||||||:|.||..:|||:|||||||||.||||||:|||.||:|.||||:|:||:
 Frog   348 RLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAE 412

  Fly   372 LESETKAKRRVFRKALEHIPNSVRLWKAAVELENPDDARILLSRAVECCNTSVELWLALARLETY 436
            ||::.:||:||.||||||:||||||||||||||.|:||||:||||||||.|:|||||||||||||
 Frog   413 LETDLRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTNVELWLALARLETY 477

  Fly   437 ENARKVLNKARENIPTDRQIWTTAAKLEEANGNIHMVEKIIDRSLTSLTVNGVEINRDQWFQEAI 501
            ||||||||||||||||||.||.|||||||||||..||||||||::|||..|||||||:||.|:|.
 Frog   478 ENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDAE 542

  Fly   502 EAEKSGAVNCCQSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAFECARAVYAHALQIFPSKKSI 566
            |.:|:|:|..||:|:|.|||||:||||||.||::||:.|...:|.|||||:|||:||:||||||:
 Frog   543 ECDKAGSVATCQAIIKDVIGIGIEEEDRKHTWMEDADSCVAHSALECARAIYAHSLQVFPSKKSV 607

  Fly   567 WLRAAYFEKNHGTRESLEALLQRAVAHCPKSEILWLMGAKSKWMAGDVPAARGILSLAFQANPNS 631
            ||||||||||||||||||||||||||||||:|:||||||||||:||||||||.||:|||||||||
 Frog   608 WLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNS 672

  Fly   632 EDIWLAAVKLESENSEYERARRLLAKARGSAPTPRVMMKSARLEWALEKFDEALRLLEEAVEVFP 696
            |:||||||||||||:|||||||||||||.||||.||.|||.:|||.|...:.|..|.|||:..:.
 Frog   673 EEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIEAAQDLCEEALRHYE 737

  Fly   697 DFPKLWMMKGQIEEQQRRTDDAAATYTLGLKKCPTSIPLWILSANLEERKGVLTKARSILERGRL 761
            |||||||||||||||..:.:.|...|..|||||..|.|||:|.:.|||:.|.||:||:|||:.||
 Frog   738 DFPKLWMMKGQIEEQGEQIEKARDAYNQGLKKCLHSTPLWLLLSRLEEKVGQLTRARAILEKSRL 802

  Fly   762 RNPKVAVLWLEAIRVELRAGLKEIASTMMARALQECPNAGELWAEAIFMETKPQRKTKSVDALKK 826
            :|||...||||::|:|.|||||.||:|:||:|||||||:|.|||||:|:|.:|||||||||||||
 Frog   803 KNPKTPELWLESVRLEFRAGLKNIANTLMAKALQECPNSGILWAEAVFLEARPQRKTKSVDALKK 867

  Fly   827 CEHDPHVLLAVSKLFWSEHKFSKCRDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRC 891
            |||||||||||:||||||.|.:|.|:||:||||||.|||||||.||||||.||||.||:|:..||
 Frog   868 CEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWATFYKFELQHGTEEQQEEIRKRC 932

  Fly   892 ISAEPTHGESWCRVSKNIQNWQFKTPEVLRAVVREL 927
            .:|||.|||.||.|||:|:|||.|..|:|..|..::
 Frog   933 ENAEPRHGELWCAVSKDIKNWQQKIGEILVLVAAQI 968

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6841NP_001303371.1 PRP1_N 22..173 CDD:283962 110/154 (71%)
TPR repeat 393..419 CDD:276809 22/25 (88%)
TPR repeat 424..448 CDD:276809 23/23 (100%)
HAT 434..466 CDD:214642 29/31 (94%)
TPR repeat 454..481 CDD:276809 22/26 (85%)
TPR 543..803 CDD:223533 188/259 (73%)
HAT 546..576 CDD:214642 24/29 (83%)
TPR repeat 633..660 CDD:276809 24/26 (92%)
TPR_14 665..708 CDD:290164 24/42 (57%)
TPR repeat 698..728 CDD:276809 18/29 (62%)
TPR repeat 733..758 CDD:276809 14/24 (58%)
TPR repeat 767..795 CDD:276809 17/27 (63%)
prpf6NP_001025642.1 PRP1_N 45..200 CDD:310788 110/154 (71%)
TPR_11 321..>939 CDD:330823 466/617 (76%)
TPR repeat 436..459 CDD:276809 19/22 (86%)
TPR repeat 464..490 CDD:276809 24/25 (96%)
TPR repeat 495..522 CDD:276809 22/26 (85%)
TPR repeat 674..701 CDD:276809 24/26 (92%)
TPR repeat 739..769 CDD:276809 18/29 (62%)
TPR repeat 774..799 CDD:276809 14/24 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 686 1.000 Domainoid score I134
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H5368
Inparanoid 1 1.050 1383 1.000 Inparanoid score I129
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D107151at33208
OrthoFinder 1 1.000 - - FOG0004740
OrthoInspector 1 1.000 - - oto104554
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3335
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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