DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6841 and Prpf6

DIOPT Version :9

Sequence 1:NP_001303371.1 Gene:CG6841 / 40064 FlyBaseID:FBgn0036828 Length:931 Species:Drosophila melanogaster
Sequence 2:NP_001073234.1 Gene:Prpf6 / 366276 RGDID:1307103 Length:941 Species:Rattus norvegicus


Alignment Length:936 Identity:674/936 - (72%)
Similarity:792/936 - (84%) Gaps:19/936 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 NRNKKHFLGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPATK-----RKKKDEE 70
            |:.||.|||:|||||||.|:|||||||||||||||||||||..|||||||..:     .||....
  Rat     2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQAA 66

  Fly    71 EEEDEDLNDSNYDEFSGYSGSLFSKDPYDKDDEEADAIYDSIDKRMDEKRKEYRDRRLREDLERY 135
            :::||||||:|||||:||:|||||..||:||||||||||.::||||||:|||.|::|.:|::|:|
  Rat    67 DDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIEKY 131

  Fly   136 RQERPKIQQQFSDLKRSLASVTSEEWSTIPEVGDSRNRKQRNPRAEKFTPLPDSLISRNL-GGES 199
            |.||||||||||||||.||.||.|||.:||||||:||::|||||.||.||:|||..:::| .||:
  Rat   132 RMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQTGEN 196

  Fly   200 SSTLDP------------SSGLASMVPGVATPGMLTP-TGDLDLRKIGQARNTLMNVKLSQVSDS 251
            .:::||            ..||.:..||..|||::|| ||:||:|||||||||||:::|||||||
  Rat   197 HTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDS 261

  Fly   252 VTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQ 316
            |:||||||||||||||.|||||:||||||||||||||||||||||:|||||||||||||||||:|
  Rat   262 VSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQ 326

  Fly   317 MARNLIMRGCEMNIQSEDLWLEAARLQPPDTAKAVIAQAARHIPTSVRIWIKAADLESETKAKRR 381
            :||||||:|.||..:|||:|||||||||.||||||:|||.||:|.||||:|:||:||::.:||:|
  Rat   327 VARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKR 391

  Fly   382 VFRKALEHIPNSVRLWKAAVELENPDDARILLSRAVECCNTSVELWLALARLETYENARKVLNKA 446
            |.||||||:||||||||||||||.|:||||:||||||||.|||||||||||||||||||||||||
  Rat   392 VLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARKVLNKA 456

  Fly   447 RENIPTDRQIWTTAAKLEEANGNIHMVEKIIDRSLTSLTVNGVEINRDQWFQEAIEAEKSGAVNC 511
            ||||||||.||.|||||||||||..||||||||::|||..|||||||:||.|:|.|.:::|:|..
  Rat   457 RENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVAT 521

  Fly   512 CQSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAFECARAVYAHALQIFPSKKSIWLRAAYFEKN 576
            ||::::||||||:||||||.||::||:.|...||.|||||:||:|||:||||||:||||||||||
  Rat   522 CQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKN 586

  Fly   577 HGTRESLEALLQRAVAHCPKSEILWLMGAKSKWMAGDVPAARGILSLAFQANPNSEDIWLAAVKL 641
            ||||||||||||||||||||:|:||||||||||:||||||||.||:||||||||||:||||||||
  Rat   587 HGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKL 651

  Fly   642 ESENSEYERARRLLAKARGSAPTPRVMMKSARLEWALEKFDEALRLLEEAVEVFPDFPKLWMMKG 706
            ||||:|||||||||||||.||||.||.|||.:|||.|.....|..|.|||:..:.||||||||||
  Rat   652 ESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNITAAQELCEEALRHYEDFPKLWMMKG 716

  Fly   707 QIEEQQRRTDDAAATYTLGLKKCPTSIPLWILSANLEERKGVLTKARSILERGRLRNPKVAVLWL 771
            |||||....:.|...|..||||||.|.|||:|.:.|||:.|.||:||:|||:.||:|||...|||
  Rat   717 QIEEQGELMERAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWL 781

  Fly   772 EAIRVELRAGLKEIASTMMARALQECPNAGELWAEAIFMETKPQRKTKSVDALKKCEHDPHVLLA 836
            |::|:|.|||||.||:|:||:|||||||:|.||:||:|:|.:|||||||||||||||||||||||
  Rat   782 ESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLA 846

  Fly   837 VSKLFWSEHKFSKCRDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRCISAEPTHGES 901
            |:||||||.|.:|.|:||:||||||.|||||||:||||||.||||.||:||..||.:|||.|||.
  Rat   847 VAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHGEL 911

  Fly   902 WCRVSKNIQNWQFKTPEVLRAVVREL 927
            ||.|||:|.|||.|..|:|..|...:
  Rat   912 WCAVSKDITNWQRKIGEILVLVAARI 937

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6841NP_001303371.1 PRP1_N 22..173 CDD:283962 110/155 (71%)
TPR repeat 393..419 CDD:276809 22/25 (88%)
TPR repeat 424..448 CDD:276809 23/23 (100%)
HAT 434..466 CDD:214642 29/31 (94%)
TPR repeat 454..481 CDD:276809 22/26 (85%)
TPR 543..803 CDD:223533 190/259 (73%)
HAT 546..576 CDD:214642 24/29 (83%)
TPR repeat 633..660 CDD:276809 24/26 (92%)
TPR_14 665..708 CDD:290164 24/42 (57%)
TPR repeat 698..728 CDD:276809 18/29 (62%)
TPR repeat 733..758 CDD:276809 14/24 (58%)
TPR repeat 767..795 CDD:276809 17/27 (63%)
Prpf6NP_001073234.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..79 51/76 (67%)
PRP1_N 13..169 CDD:399435 110/155 (71%)
PEP_TPR_lipo 290..>806 CDD:274350 388/515 (75%)
HAT 1 384..416 24/31 (77%)
TPR repeat 405..428 CDD:276809 19/22 (86%)
HAT 2 418..444 23/25 (92%)
TPR repeat 433..459 CDD:276809 25/25 (100%)
HAT 3 445..476 28/30 (93%)
TPR repeat 464..491 CDD:276809 22/26 (85%)
HAT 4 554..586 26/31 (84%)
HAT 5 588..620 29/31 (94%)
HAT 6 622..654 28/31 (90%)
TPR repeat 643..670 CDD:276809 24/26 (92%)
HAT 7 689..721 18/31 (58%)
TPR repeat 708..738 CDD:276809 18/29 (62%)
HAT 8 723..755 15/31 (48%)
TPR repeat 743..768 CDD:276809 14/24 (58%)
TPR repeat 777..805 CDD:276809 17/27 (63%)
HAT 9 855..887 23/31 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350806
Domainoid 1 1.000 678 1.000 Domainoid score I128
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5368
Inparanoid 1 1.050 1379 1.000 Inparanoid score I114
OMA 1 1.010 - - QHG54558
OrthoDB 1 1.010 - - D107151at33208
OrthoFinder 1 1.000 - - FOG0004740
OrthoInspector 1 1.000 - - oto97864
orthoMCL 1 0.900 - - OOG6_102682
Panther 1 1.100 - - LDO PTHR11246
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3335
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.910

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