DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp6 and prp-6

DIOPT Version :10

Sequence 1:NP_649073.1 Gene:Prp6 / 40064 FlyBaseID:FBgn0036828 Length:931 Species:Drosophila melanogaster
Sequence 2:NP_507525.1 Gene:prp-6 / 180180 WormBaseID:WBGene00013343 Length:968 Species:Caenorhabditis elegans


Alignment Length:970 Identity:519/970 - (53%)
Similarity:683/970 - (70%) Gaps:43/970 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSNITAAVIANRNKKHFLGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDV------------S 53
            |:......:.|:.||.|:|:|||.|||.||||||||||||||||||||..::            :
 Worm     1 MATTIPGSLVNKTKKFFMGMPAPTGYVPGVGRGATGFTTRSDIGPARDPTELPEAGPVGPSPQGA 65

  Fly    54 DDRHAPPATKRKKKDEEEEEDEDLNDSNYDEFSGYSGSLFSKDPYDKDDEEADAIYDSIDKRMDE 118
            ....||||   |:..:::.:.||||::|||||||||||||||||||::||:||.||:.:|.|:||
 Worm    66 SSSSAPPA---KRARDDDGDGEDLNEANYDEFSGYSGSLFSKDPYDQEDEDADRIYNEVDDRLDE 127

  Fly   119 KRKEYRDRRLREDLERYRQERPKIQQQFSDLKRSLASVTSEEWSTIPEVGDSRNRKQRNPRAEKF 183
            :.||.|:::.:|.:|.:.::||||||.|.||||.||.||.:||..||||||.||:.:||.|||||
 Worm   128 RHKERREKKYKELVELFHKDRPKIQQGFQDLKRQLAEVTEDEWQAIPEVGDMRNKAKRNARAEKF 192

  Fly   184 TPLPDSLISRNLG-GESSSTLDPSSGL--------------------ASMVPGVATPGM---LTP 224
            ||:|||:|:.|:. |:.|.::|..:||                    |....|:.|||.   :..
 Worm   193 TPVPDSIIAMNMNYGQMSHSIDSGNGLTTPFASGFMSTLGGGGGAAAAGAKSGIMTPGWKSDIPS 257

  Fly   225 TG---DLDLRKIGQARNTLMNVKLSQVSDSVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARL 286
            :|   ||||.|||||||.:|:::|:||||||||||||||||||||:||:||..|||:.||||||:
 Worm   258 SGTSTDLDLVKIGQARNKIMDMQLTQVSDSVTGQTVVDPKGYLTDMQSIIPQMGGDLQDIKKARM 322

  Fly   287 LLKSVRETNPNHPPAWIASARLEEVTGKVQMARNLIMRGCEMNIQSEDLWLEAARLQPPDTAKAV 351
            ||||||||||.|||||:|||.|||..||:|.|||.||.|||....||:|||.|.||.||:..:::
 Worm   323 LLKSVRETNPRHPPAWVASAVLEEQAGKLQTARNFIMEGCEKIKNSEELWLHAIRLHPPELGRSI 387

  Fly   352 IAQAARHIPTSVRIWIKAADLESETKAKRRVFRKALEHIPNSVRLWKAAVELENPDDARILLSRA 416
            :|.|.|..|.|||:|.||:|||.:.|.|::|.|||||.||:||:|||||||||:|:||||||:||
 Worm   388 VANAVRSCPHSVRLWCKASDLEQDLKDKKKVLRKALEQIPSSVKLWKAAVELEDPEDARILLTRA 452

  Fly   417 VECCNTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEANGNIHMVEKIIDRSL 481
            ||||::|.|:||||||||||||||||||||||:|||||.||.:||:|||..|...||:||:.:::
 Worm   453 VECCSSSTEMWLALARLETYENARKVLNKAREHIPTDRHIWLSAARLEETRGQKDMVDKIVAKAM 517

  Fly   482 TSLTVNGVEINRDQWFQEAIEAEKSGAVNCCQSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAF 546
            :||.||.||||||||.::|::||.:.....||:|::.|||:|||:||::.||:.|||...||.||
 Worm   518 SSLKVNQVEINRDQWLKDAVDAEMAKCPITCQAIIRNVIGLGVEDEDKRTTWLADAENFEKEEAF 582

  Fly   547 ECARAVYAHALQIFPSKKSIWLRAAYFEKNHGTRESLEALLQRAVAHCPKSEILWLMGAKSKWMA 611
            .|.|.|||.||:.|..|:|||..|.:||:.||:.:..||:|.:|....|:.|..|||.||.:::.
 Worm   583 TCVRTVYAIALKEFSRKRSIWDAAIHFEREHGSLDEHEAILLKACETVPEVEDYWLMLAKLRFVN 647

  Fly   612 GDVPAARGILSLAFQANPN-SEDIWLAAVKLESENSEYERARRLLAKARGSAPTPRVMMKSARLE 675
            ..|..||..|..||:.:.: ||.|||||.|:|.|..:::.||.|..|||..||:.||.||:|..|
 Worm   648 KRVGEARDTLMSAFEKHGHQSEKIWLAATKIEIETDQFDTARGLFGKARAKAPSARVWMKNAHFE 712

  Fly   676 WALEKFDEALRLLEEAVEVFPDFPKLWMMKGQIEEQQRRTDDAAATYTLGLKKCPTSIPLWILSA 740
            |.|...:||.||.||.::.:.||.|::::.||:.||......|...||.|::|||..||||||..
 Worm   713 WCLGNVEEAKRLCEECIQKYDDFHKIYLVLGQVLEQMNDVHGARLAYTQGIRKCPGVIPLWILLV 777

  Fly   741 NLEERKGVLTKARSILERGRLRNPKVAVLWLEAIRVELRAGLKEIASTMMARALQECPNAGELWA 805
            .|||:.|.:.|||..||:.||||||...||||::|.|.|.|..|:|...|:||||||..:|:|||
 Worm   778 RLEEKAGQIVKARVDLEKARLRNPKNDDLWLESVRFEQRVGCPEMAKERMSRALQECEGSGKLWA 842

  Fly   806 EAIFMETKPQRKTKSVDALKKCEHDPHVLLAVSKLFWSEHKFSKCRDWFNRTVKIDPDLGDAWAY 870
            |||:||....|:.||:||||||||:||||:|.::|||||.|..|.|:||.|.|.:|||.|||:|.
 Worm   843 EAIWMEGPHGRRAKSIDALKKCEHNPHVLIAAARLFWSERKIKKAREWFVRAVNLDPDNGDAFAN 907

  Fly   871 FYKFELLHGTEAQQQEVLDRCISAEPTHGESWCRVSKNIQNWQFKTPEVLRAVVRELSIP 930
            |..||.:||.|..::.|..:|:::||.:|:.|..|||:..||:..|.|:|:...:::.:|
 Worm   908 FLAFEQIHGKEEDRKSVFKKCVTSEPRYGDLWQSVSKDPINWRRTTEEILQLATQKIKVP 967

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp6NP_649073.1 PRP1_N 22..173 CDD:461908 92/162 (57%)
PEP_TPR_lipo 236..>800 CDD:274350 321/564 (57%)
TPR repeat 393..419 CDD:276809 21/25 (84%)
TPR repeat 424..448 CDD:276809 21/23 (91%)
TPR repeat 454..481 CDD:276809 13/26 (50%)
LapB 610..861 CDD:442196 127/251 (51%)
TPR repeat 633..660 CDD:276809 13/26 (50%)
TPR repeat 698..728 CDD:276809 10/29 (34%)
TPR repeat 733..758 CDD:276809 14/24 (58%)
TPR repeat 767..795 CDD:276809 13/27 (48%)
prp-6NP_507525.1 PLN02217 <3..73 CDD:215130 33/69 (48%)
PRP1_N 22..182 CDD:461908 92/162 (57%)
LapB 315..507 CDD:442196 132/191 (69%)
TPR repeat 399..424 CDD:276809 14/24 (58%)
TPR repeat 429..455 CDD:276809 21/25 (84%)
TPR repeat 460..484 CDD:276809 21/23 (91%)
TPR repeat 490..518 CDD:276809 13/27 (48%)
LapB 569..833 CDD:442196 123/263 (47%)
TPR repeat 670..697 CDD:276809 13/26 (50%)
TPR repeat 702..730 CDD:276809 14/27 (52%)
TPR repeat 735..765 CDD:276809 10/29 (34%)
TPR repeat 770..796 CDD:276809 15/25 (60%)
TPR repeat 804..832 CDD:276809 13/27 (48%)
TadD <852..933 CDD:444034 43/80 (54%)
TPR repeat 867..897 CDD:276809 17/29 (59%)
TPR repeat 902..929 CDD:276809 11/26 (42%)

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