DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3902 and gcdh

DIOPT Version :9

Sequence 1:NP_649069.2 Gene:CG3902 / 40059 FlyBaseID:FBgn0036824 Length:414 Species:Drosophila melanogaster
Sequence 2:XP_012808612.1 Gene:gcdh / 549043 XenbaseID:XB-GENE-1016447 Length:484 Species:Xenopus tropicalis


Alignment Length:390 Identity:115/390 - (29%)
Similarity:202/390 - (51%) Gaps:31/390 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 LTDDEKMMKETVAKLAQEQIQPLVKKMDFEHKFDPSVVKAVFENGLMGIEIDTELGGSGC---NF 98
            ||:||.|::::.....||::.|.:...:.:..|:..::..:.|.|::|    :.:.|.||   ::
 Frog   106 LTEDEIMIRDSFRAYCQEKLMPRILMANRKEVFERDIISEMGELGVLG----STIKGYGCAGTSY 166

  Fly    99 MTNIVVVEELSKIDPAVAAFVDIHNTLVNSLMIKFGNAEQKAKYLPKLAQ-EYAGSFALTEPGAG 162
            :...::..|:.::|.:..:.:.:.::||...:..:|:.|||.||||:||. |:.|.|.||||..|
 Frog   167 VAYGLLAREVERVDSSYRSVMSVQSSLVMHPIAAYGSEEQKQKYLPRLASGEWLGCFGLTEPNHG 231

  Fly   163 SDAFSLKTVAKKDGSH--YVINGSKMWISNSDVAGVFLIFANAKPEDG-YRGITTFIVDRETPGL 224
            ||...::|.|:.:.|.  |.:||:|.||:||.:|.:.:::|..  ||| .||   |:::|.|.||
 Frog   232 SDPAGMETRARYNPSSKTYTLNGAKTWITNSPIADLCVVWAIC--EDGKVRG---FLIERGTKGL 291

  Fly   225 IVNKPEDKLGIRASGTCQLTFDNVRVPEENIL-GTFGHGYKYAAGFLNEGRIGIAAQMVGLAQGT 288
            ...|.|.|..:|||.|..:..::|.:||||:| ...|.|..:  |.||..|.||:...:|.|:..
 Frog   292 STPKIEGKFSLRASATGMILLEDVEIPEENLLPNVSGLGGPF--GCLNNARYGISWGALGAAEFC 354

  Fly   289 FDATIPYLLERKQFGDAIYNFQSMQHQIATVATEIEAARLMTYNAARLQEQGVPFQKEAAMAKYY 353
            |.....|.|:|.|||..:...|.:|.::|.:.|:|...........||:::.....:..:|.|..
 Frog   355 FHTARQYTLDRIQFGVPLARNQLIQKKLADMLTDITIGLQACLRLGRLKDEEKATPEMISMLKRN 419

  Fly   354 ASEVAQRAAIKCVDWMGGVGFTRDFPQEKYYRDVKIGAIYEGT------------TNMQLSTIAK 406
            :...|...|.:..|.:||.|.:.::...::..:::....||||            |.:|..|:.|
 Frog   420 SCGKALDIARQARDMLGGNGISDEYHIIRHVMNLESVNTYEGTHDVHALILGRAITGLQAFTVGK 484

  Fly   407  406
             Frog   485  484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3902NP_649069.2 CaiA 37..414 CDD:224871 115/390 (29%)
SCAD_SBCAD 39..410 CDD:173847 113/388 (29%)
gcdhXP_012808612.1 GCD 94..480 CDD:173840 113/384 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D589058at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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