DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3902 and Arc42

DIOPT Version :9

Sequence 1:NP_649069.2 Gene:CG3902 / 40059 FlyBaseID:FBgn0036824 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_650840.1 Gene:Arc42 / 42364 FlyBaseID:FBgn0038742 Length:405 Species:Drosophila melanogaster


Alignment Length:411 Identity:154/411 - (37%)
Similarity:244/411 - (59%) Gaps:7/411 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LKKLPVRMLANAARQQSAAMSSATGLPPPLTFLTDDEKMMKETVAKLAQEQIQPLVKKMDFEHKF 69
            ::.:..|.|..|.|..:|...::      |:.|::..:|::::....|..::.....|.|.||.:
  Fly     1 MQSVLTRSLCIARRSLNARQIAS------LSALSETHQMLQKSCRDFANNELSGNAAKFDREHLY 59

  Fly    70 DPSVVKAVFENGLMGIEIDTELGGSGCNFMTNIVVVEELSKIDPAVAAFVDIHNTLVNSLMIKFG 134
            ....::.:.|.|:|.:.|..||||:|.:::...:.:||:|:...:....:.::|:|....::.||
  Fly    60 PEKQIRQMGELGVMAVAIPEELGGTGLDYVAYAIAMEEISRGCASAGVIMSVNNSLYLGPLLSFG 124

  Fly   135 NAEQKAKYL-PKLAQEYAGSFALTEPGAGSDAFSLKTVAKKDGSHYVINGSKMWISNSDVAGVFL 198
            |..||..|: |....|..|.|||:|||.||||.:..|:|...|.|:|:||:|.||:|:..|...:
  Fly   125 NDAQKKDYITPFTTGERVGCFALSEPGNGSDAGAASTIATDKGDHFVLNGTKAWITNAFEAEAAI 189

  Fly   199 IFANAKPEDGYRGITTFIVDRETPGLIVNKPEDKLGIRASGTCQLTFDNVRVPEENILGTFGHGY 263
            :||....:..::||:.|||.:.|.|..:.|.|||||||.|.||||.|::..||:||:||..|.|:
  Fly   190 VFATTNKQLKHKGISAFIVPKATKGFSLGKKEDKLGIRGSSTCQLIFEDCVVPKENMLGEPGFGF 254

  Fly   264 KYAAGFLNEGRIGIAAQMVGLAQGTFDATIPYLLERKQFGDAIYNFQSMQHQIATVATEIEAARL 328
            |.|...|:.||||||.|.:|:.|...:..:.|..:|:.||..|...||:|.:||.::..:|:|||
  Fly   255 KIAMQTLDAGRIGIAGQALGIGQAALELAVDYAQKRQAFGKPIAKLQSIQQKIADMSLAMESARL 319

  Fly   329 MTYNAARLQEQGVPFQKEAAMAKYYASEVAQRAAIKCVDWMGGVGFTRDFPQEKYYRDVKIGAIY 393
            :|:.||.|::|..|:.|||||||..|||.|...:.:|:..:||:|:..|...|::|||.:|..||
  Fly   320 LTWRAAWLKDQKQPYTKEAAMAKLAASEAATLCSHQCIQILGGMGYVTDMAAERHYRDARITEIY 384

  Fly   394 EGTTNMQLSTIAKCIKKDYAA 414
            |||:.:|...||..|.|:||:
  Fly   385 EGTSEIQRLVIAGSILKEYAS 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3902NP_649069.2 CaiA 37..414 CDD:224871 147/377 (39%)
SCAD_SBCAD 39..410 CDD:173847 144/371 (39%)
Arc42NP_650840.1 CaiA 27..405 CDD:224871 147/377 (39%)
SCAD_SBCAD 29..401 CDD:173847 144/371 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45460755
Domainoid 1 1.000 97 1.000 Domainoid score I372
eggNOG 1 0.900 - - E1_COG1960
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 183 1.000 Inparanoid score I179
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D589058at2759
OrthoFinder 1 1.000 - - FOG0000508
OrthoInspector 1 1.000 - - mtm9754
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR43884
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
98.900

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