DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3902 and gcdha

DIOPT Version :9

Sequence 1:NP_649069.2 Gene:CG3902 / 40059 FlyBaseID:FBgn0036824 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_957180.1 Gene:gcdha / 393860 ZFINID:ZDB-GENE-040426-1855 Length:441 Species:Danio rerio


Alignment Length:463 Identity:133/463 - (28%)
Similarity:213/463 - (46%) Gaps:83/463 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SLKKLPVRMLANAARQQSAAMSSATGL-----------------PPPLTF-----------LTDD 40
            :||....|:|.|:.|.....:|.|.|.                 .|.:||           ||::
Zfish     2 ALKTALSRLLVNSQRCPLMCVSRAQGTLAPAAYDKEERIKKTSKQPKVTFDWRDALDLEGQLTEE 66

  Fly    41 EKMMKETVAKLAQEQIQPLVKKMDFEHKFDPSVVKAVFENGLMGIEIDTELGGSGC---NFMTNI 102
            |.|::::.....::::.|.:...:....|...::..:.|.|::|..|.    |.||   :::...
Zfish    67 EIMIRDSFRTYCEDKLMPRIIMANRNEHFHREILNEMGELGVLGPTIQ----GYGCAGTSYVAYG 127

  Fly   103 VVVEELSKIDPAVAAFVDIHNTLVNSLMIKFGNAEQKAKYLPKLAQ-EYAGSFALTEPGAGSDAF 166
            ::..|:.::|....:.:.:.::||...:..:|..|||.|||||||: |..|.|.||||..|||..
Zfish   128 LIAREVERVDSGYRSVMSVQSSLVMHPINAYGTEEQKQKYLPKLARGEILGCFGLTEPNHGSDPA 192

  Fly   167 SLKTVAKKDGSH--YVINGSKMWISNSDVAGVFLIFANAKPEDG-YRGITTFIVDRETPGLIVNK 228
            .::|.||.:.|.  |.|:|:|.||:||..|.:.:::  ||.||| .||   |:::|...||...|
Zfish   193 GMETKAKYNPSSRTYSISGTKTWITNSPYADICVVW--AKCEDGKVRG---FVLERGMKGLSTPK 252

  Fly   229 PEDKLGIRASGTCQLTFDNVRVPEENIL-------GTFGHGYKYAAGFLNEGRIGIAAQMVGLAQ 286
            .|.|..:|||.|..:..|.|.|||||:|       |.|        |.||..|.|||...:|.|:
Zfish   253 IEGKFSLRASATGMIVMDEVEVPEENLLPHVSGLAGPF--------GCLNNARFGIAWGALGAAE 309

  Fly   287 GTFDATIPYLLERKQFGDAIYNFQSMQHQIATVATEIEAARLMTYNAARLQEQG------VPFQK 345
            ..|.|...|.::|.|||..:...|.:|.::|.:.|||...........||.:|.      :...|
Zfish   310 FCFHAARQYTMDRIQFGVPLARNQLIQKKMADMLTEITIGLQSCLQLGRLIDQKKHTPEMISLLK 374

  Fly   346 EAAMAKYYASEVAQRAAIKCVDWMGGVGFTRDFPQEKYYRDVKIGAIYEGT------------TN 398
            ..:..|  |.::|::|.    |.:||.|...::...::..:::....||||            |.
Zfish   375 RNSCGK--ALDIARQAR----DMLGGNGIADEYHIIRHVMNLEAVNTYEGTHDIHALILGRAITG 433

  Fly   399 MQLSTIAK 406
            :|..|:.|
Zfish   434 LQSFTVGK 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3902NP_649069.2 CaiA 37..414 CDD:224871 121/402 (30%)
SCAD_SBCAD 39..410 CDD:173847 119/400 (30%)
gcdhaNP_957180.1 GCD 51..437 CDD:173840 120/408 (29%)
CaiA 63..437 CDD:224871 119/396 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D589058at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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