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Protein Alignment CG3902 and Ivd

DIOPT Version :9

Sequence 1:	NP_649069.2	Gene:	CG3902 / 40059	FlyBaseID:	FBgn0036824	Length:	414	Species:	Drosophila melanogaster
Sequence 2:	NP_036724.1	Gene:	Ivd / 24513	RGDID:	2936	Length:	424	Species:	Rattus norvegicus

Alignment Length:	425	Identity:	145/425 - (34%)
Similarity:	226/425 - (53%)	Gaps:	27/425 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly    13 LANAARQQSAAMSS--ATGLPPPLTF----------------LTDDEKMMKETVAKLAQEQIQPL 59
            :|.|.|.....:||  ...||.||..                |.:::|.::.|::|..||.:.|.
  Rat     1 MATAVRLLGRRVSSWRLRPLPSPLAVPQRAHSMLPVDDDINGLNEEQKQLRHTISKFVQENLAPK 65

  Fly    60 VKKMDFEHKFD--PSVVKAVFENGLMGIEIDTELGGSGCNFMTNIVVVEELSKIDPAVAAFVDIH 122
            .:::|..:.|.  ....|.:...|::||....:.||||..::.:::|:||:|:...||......|
  Rat    66 AQEIDQSNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAH 130

  Fly   123 NTLVNSLMIKFGNAEQKAKYLPKL-AQEYAGSFALTEPGAGSDAFSLKTVAKKDGSHYVINGSKM 186
            :.|..:.:::.||..||.|||||| :.|:.|:.|::||.||||..|::..|:|.|.|||:||:|.
  Rat   131 SNLCINQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKF 195

  Fly   187 WISNSDVAGVFLIFA----NAKPEDGYRGITTFIVDRETPGLIVNKPEDKLGIRASGTCQLTFDN 247
            ||:|...|.|.:::|    .|.|..  ||||.|||:::.||...:|..||||:|.|.||:|.|::
  Rat   196 WITNGPDADVLVVYAKTDLTAVPAS--RGITAFIVEKDMPGFSTSKKLDKLGMRGSNTCELVFED 258

  Fly   248 VRVPEENILGTFGHGYKYAAGFLNEGRIGIAAQMVGLAQGTFDATIPYLLERKQFGDAIYNFQSM 312
            .:||..|||.....|.......|:..|:.:|...:|:.|...|.|||||..|:.||..|..||.|
  Rat   259 CKVPAANILSQESKGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQLM 323

  Fly   313 QHQIATVATEIEAARLMTYNAARLQEQGVPFQKEAAMAKYYASEVAQRAAIKCVDWMGGVGFTRD 377
            |.::|.:.|.:.|.|...||.||..::|....|:.|....|.:|.|.:.|:..:..:||.|:..|
  Rat   324 QGKMADMYTRLMACRQYVYNVARACDEGHITAKDCAGVILYTAECATQVALDGIQCLGGNGYIND 388

  Fly   378 FPQEKYYRDVKIGAIYEGTTNMQLSTIAKCIKKDY 412
            ||..::.||.|:..|..||:.::...|.:....|:
  Rat   389 FPMGRFLRDAKLYEIGGGTSEVRRLVIGRAFNADF 423

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.