DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3961 and lcf1

DIOPT Version :9

Sequence 1:NP_649067.2 Gene:CG3961 / 40056 FlyBaseID:FBgn0036821 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_595726.1 Gene:lcf1 / 2540731 PomBaseID:SPBC18H10.02 Length:676 Species:Schizosaccharomyces pombe


Alignment Length:712 Identity:197/712 - (27%)
Similarity:337/712 - (47%) Gaps:121/712 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 QSPLLEGPEQIHVSKFYKESKNGKFVSYITE----NVRTLYQTFREGAYASNNGPCLGWRETL-- 127
            ||..:..|:: |.|..|   :|..|..::.|    :|.||:..||.......|...:|:|..:  
pombe     4 QSKAISKPKE-HESAIY---RNANFPDHLVETYSDDVHTLFDVFRHSVKQFGNKKAMGYRNLVKE 64

  Fly   128 --------------------------TSPYQWINYDEALLRAKNFGAGMLALGARPKQLIGIYSQ 166
                                      .|.|.::::::...:|..:...:..||........:|:.
pombe    65 HVETKMVTKVVDGEKKEVPKSWSYFELSDYNYLSFNDIYDKALRYAGALRKLGLNKGDKFELYAP 129

  Fly   167 NRPEWILYEQGCYSFSLVVVPLYDTLGPDACAFIIRQT-----------------------DMQV 208
            ....|:|..:.|.|.|:.:|..|||||.:.....:|::                       .::|
pombe   130 TSAFWLLTAEACLSQSMTIVTAYDTLGEEGLLHSLRESGVRGMYTEGHLLKTLVNPLKEIESLEV 194

  Fly   209 VIVEDDGKAAMLLEKAPRSLKIIVAIKPIRQTTLERARSRGIQIFSFIDVEKLGAKGNHPEV--- 270
            :|..:|.|        ...:|.|..|:|            .:::..|.|.||:.     |.|   
pombe   195 IIYRNDAK--------EEDIKTIQEIRP------------NLKLIKFADFEKMS-----PPVEPD 234

  Fly   271 PPTAEDLCTVCYTSGTTGNPKGVMLTHGNVVAGVCSVILQMGDHRIRAGDVMVSFLPLAHMFERC 335
            ||:.|::|.:.||||:||.||||:|:|.|:||.|.:::..:.:  :.:.|.::::|||||:.|..
pombe   235 PPSPEEICCIMYTSGSTGLPKGVILSHKNMVAIVTAIVKHVPE--VTSKDYLLAYLPLAHILEFA 297

  Fly   336 CENGMYYVGGCVGFYSGDIKEL--TN------DLKMLKPTVMPAVPRLLNRVYDKIQNDI-SASG 391
            .||.....||.:|:  .:::.|  ||      |:...:||:|..||.:...|...|.:.: :||.
pombe   298 FENICLAWGGTIGY--ANVRTLVDTNCRNCKGDINTFRPTIMVGVPAVWEMVRKGIMSKLNAASA 360

  Fly   392 LKRGLFNMAMRAKEKEIARGVLRRN---GC-WDKLVFKKVH-QAFGGNLRLMVVGSAPLAGNVLT 451
            :||.:|..|...|.|     ::|.|   .| .|..||.|:. ...||.||..:.|.:.|:.:...
pombe   361 VKRSVFWTAYYTKAK-----LMRHNLPGSCVLDTAVFNKIRSMGTGGRLRYTLSGGSALSPDTKR 420

  Fly   452 FMRCALGCLVLEGYGQTECTGAITLTVQGD---HVPNHVGPPVSCNAVKLVDVPEMEYFANQN-- 511
            |:...| |.:|.|||.||.:.|  ..||..   ::.:..|..:.|..:||||..|..|.::.:  
pombe   421 FLSIVL-CPMLIGYGLTEISAA--AMVQNPACFNLDDSAGSLLPCTEMKLVDCEEGNYNSHGHPP 482

  Fly   512 TGEVCVRGSNVFHGYYKDPEKTAEAIDSEGWHHTGDVGMWLPNGTLRIIDRRKHIFKLSQGEYIV 576
            .||:.:||.::..||....::..|:...:||..|||||...|.|.||||||:|::.|...||||.
pombe   483 RGEIWLRGPSLTRGYLNRDKENKESFTPDGWFRTGDVGELTPEGLLRIIDRKKNLVKTQNGEYIA 547

  Fly   577 PEKIENIYTLSQYVNQVYVYGESLKSCIIAVVVPDTDVLKQWATEN---NVRGTLSVLCNNKNVK 638
            .||:|:.|..|..|:.:.||.:..|...:|::||:..|:::.|||.   :...:...:|:||.|:
pombe   548 LEKLESRYRTSSLVSNICVYADQTKVKPLAIIVPNEPVVRKLATEQAGLSPDASWEEVCHNKKVR 612

  Fly   639 ELIMNDMLNWGKQSGLKSFEQVKDIYLHPDPFSVQNGLLTPTFKAKRPQLKSYFKPQLEDMY 700
            :|:.:|::..|:.....:.|.::::.|.|..|:.:|||:|...|.:|.::...||.:::..|
pombe   613 QLVYDDLIRIGRSHHFANIELIQNVVLVPIEFTPENGLVTAAQKLQRRKILDRFKKEIDAAY 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3961NP_649067.2 LC-FACS_euk 130..701 CDD:341250 179/619 (29%)
lcf1NP_595726.1 FAA1 50..676 CDD:223953 183/662 (28%)
LC-FACS_euk 92..674 CDD:213293 179/618 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1022
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53493
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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