DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad9 and hpr-9

DIOPT Version :9

Sequence 1:NP_001097639.2 Gene:Rad9 / 40054 FlyBaseID:FBgn0025807 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_499342.3 Gene:hpr-9 / 176483 WormBaseID:WBGene00001997 Length:521 Species:Caenorhabditis elegans


Alignment Length:497 Identity:94/497 - (18%)
Similarity:196/497 - (39%) Gaps:118/497 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGSISFKRSMFEVYDMPPHSDFY-- 70
            ||.:::::::.:|||:.:::.||:.:..|..:.:|            ||.|.|:...|  :|:  
 Worm    34 SNLKIMSRSIAALSKISEDVLIEVSEGGLFFKTVN------------RSKFCVFRFAP--EFFNA 84

  Fly    71 -------------CKISMKGCLAVFRNM--NEVEY--CELNLLDNQTNLQVNLRCK--LETTKEA 116
                         |::|||....:|:.:  .|..:  ||..:......:.|.|:..  :|.|..|
 Worm    85 CDVSMINKKAVNICRLSMKSAQRIFKGVAFGEKNFVGCEFRIDPKAERMMVKLQMNYDIERTIHA 149

  Fly   117 TISIIDD------------QNINTNINTDQMPNII--RGDHKLLTDISNNFNSSEEELTLEANSG 167
            .:..:..            :||.....:..:|..:  :||               .|:|::....
 Worm   150 KLREMGSMLHKPTYNRSGCRNITVVFASTLLPIFVQMKGD---------------IEVTMKVTDD 199

  Fly   168 SVVAKNYIE---------GARVNDKFMRTQLKLKPSEFEQYQVTKETVITFCIKEFRAFLLFAEC 223
            .:..:|:..         |.....|.::|:..:...:..::::......:|.||||.:.:.||:.
 Worm   200 GLTIRNFHSLDGVTMFNMGVEKGAKKVKTETTITCEKLTRHKIQIPVEFSFSIKEFLSIVTFADQ 264

  Fly   224 LNASLTLEFDEAGMPFLLKIKKHGEIECLLIMSTLSPDDISFSEDYCQKDLTVQDED------VR 282
            |.:.:.:.:|..|.|.::.|:.|...:..|.::|:..||....:....|:...|.|:      ..
 Worm   265 LGSEVCMYYDLPGKPLIVSIEAHPNFDIELALATMGSDDEIDLDGGILKETMAQHEEEEDKSTAH 329

  Fly   283 AAAAKRKSSVSKPNVTNKRKGSSSEPAAVQPKRRVEETQLESSLDN--------PLFQ--FRDSE 337
            :::::|||.....:.:..:|......:..|     |||....||.:        |:.:  :||.|
 Worm   330 SSSSRRKSKAIDTSSSGTQKSKKCSESLSQ-----EETTRSQSLPSRNRFVPEIPVAEQSWRDRE 389

  Fly   338 ---------APSVQHPRILAEVDTVVLIEDEAEQE-ALMLAAADAALEASMAPAPEP---PNSTE 389
                     :|.:|....:.|:|...::....::| ::..|..|.::|......||.   |...|
 Worm   390 VTVYEQREPSPDLQIVEEVMEIDNQPIVTRTIKEEHSVEQAMQDVSIETIPVETPEENIIPVEVE 454

  Fly   390 VCFINTDDSQQ----PKPAKSSSDEDETIPQSPERPNKVRTI 427
            :......:.|:    |:|.:..:.||       :|..|:|.|
 Worm   455 MLEEPEQEDQEIFKIPQPKRRKTAED-------DRNRKIRRI 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad9NP_001097639.2 PCNA 7..262 CDD:238322 54/297 (18%)
Rad9 13..258 CDD:282052 51/288 (18%)
hpr-9NP_499342.3 Rad9 40..299 CDD:309317 51/287 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158925
Domainoid 1 1.000 55 1.000 Domainoid score I7450
eggNOG 1 0.900 - - E1_KOG2810
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 74 1.000 Inparanoid score I3874
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002689
OrthoInspector 1 1.000 - - oto19246
orthoMCL 1 0.900 - - OOG6_103735
Panther 1 1.100 - - LDO PTHR15237
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1066
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.820

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