DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad9 and Rad9a

DIOPT Version :9

Sequence 1:NP_001097639.2 Gene:Rad9 / 40054 FlyBaseID:FBgn0025807 Length:456 Species:Drosophila melanogaster
Sequence 2:XP_002728900.1 Gene:Rad9a / 100361529 RGDID:2319938 Length:392 Species:Rattus norvegicus


Alignment Length:465 Identity:116/465 - (24%)
Similarity:198/465 - (42%) Gaps:84/465 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGSISFKRSMFEVY-DMP 64
            ||..:.|.|.:|:.|||.|||::|.|:::|..:..|.:|.:|:::||.....|....|:.| :..
  Rat     1 MKCLITGGNVKVLGKAVHSLSRIGDELYLEPLKDGLSLRTVNSSRSAYACFLFAPLFFQQYQEAS 65

  Fly    65 PHSDFY-CKISMKGCLAVFRNM----NEVEYCELNLLDNQTNLQVNLRCKLETTKEATISIIDDQ 124
            |..|.. |||.||..|:|||::    ..||.|.::|..:.::|.|.|.||....|...:|..|.:
  Rat    66 PGQDLLRCKILMKSFLSVFRSLATVEKTVEKCCISLSGSNSHLVVQLHCKYGVKKTHNLSFQDCE 130

  Fly   125 NINTNINTDQMPNIIRGDHKLLTDISNNFNSSEEELTLEANSG-SVVAKNY-IEGARVNDKFMRT 187
            ::....:....|:::|...::|.:...:|..:..|:||....| .|:.::| .|.|....|.|.|
  Rat   131 SLQAVFDPASCPHLLRTPARVLAEAVLSFPLALTEVTLGIGRGRRVILRSYQEEEADSTSKAMVT 195

  Fly   188 QLKLKPSEFEQYQVTKETVITFCIKEFRAFLLFAECLNASLTLEFDEAGMPFLLKIKKHGEIECL 252
            :..:...:|:|....:...:|||:||||..|.|||..|..||:.||..|.|.:..: :...::..
  Rat   196 ETSIGEEDFQQLHAPEGRAVTFCLKEFRGLLSFAESANLPLTIHFDVPGRPVIFTV-EDSLLDAH 259

  Fly   253 LIMSTLSPDDISFSEDYCQKDLTVQDEDVRAAAAKRKSSVSKPNVTNKRKGSSSEPAAVQPKRRV 317
            .:::||      ..:|.|.:||                             .|.:|....|:::.
  Rat   260 FVLATL------LEQDSCSQDL-----------------------------CSPKPHQPVPQKQP 289

  Fly   318 EETQLESSLDNPLFQFRDSEAPSVQHPRILAEVDT-VVLIEDEAEQEALMLAAADAALEASMAPA 381
            ..|.......|.                   ::|. ::.:|.....|     ::.|....|:.|.
  Rat   290 HSTPHSDDFTND-------------------DIDCYMIAMETTVGNE-----SSRAQPSTSLPPV 330

  Fly   382 PEPPNSTEVCFINTDDSQQPKPAKSSSDEDETIPQSPERPNKVRTI-FSRCFQRTYVPREPSPNT 445
            |:.          :.|...|...:....|..|:|.:|. |.|.|:: |.......:.|:.|:|  
  Rat   331 PQA----------SHDLAPPSEEEEEEAEPSTVPGTPP-PKKFRSLFFGSILAPIHSPQGPNP-- 382

  Fly   446 QVYAPNSDTE 455
             |.|.:||.|
  Rat   383 -VLAEDSDGE 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad9NP_001097639.2 PCNA 7..262 CDD:238322 80/262 (31%)
Rad9 13..258 CDD:282052 75/252 (30%)
Rad9aXP_002728900.1 PCNA 9..267 CDD:238322 79/264 (30%)
Rad9 13..265 CDD:282052 75/252 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340130
Domainoid 1 1.000 119 1.000 Domainoid score I5655
eggNOG 1 0.900 - - E1_KOG2810
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H32118
Inparanoid 1 1.050 134 1.000 Inparanoid score I4481
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1176140at2759
OrthoFinder 1 1.000 - - FOG0002689
OrthoInspector 1 1.000 - - otm46051
orthoMCL 1 0.900 - - OOG6_103735
Panther 1 1.100 - - O PTHR15237
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3445
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.760

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