DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Indy and yfbS

DIOPT Version :10

Sequence 1:NP_730363.2 Gene:Indy / 40049 FlyBaseID:FBgn0036816 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_416795.1 Gene:yfbS / 946766 ECOCYCID:G7186 Length:610 Species:Escherichia coli


Alignment Length:638 Identity:122/638 - (19%)
Similarity:203/638 - (31%) Gaps:201/638 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MATETTKMIYTPPPLDIKMEIEIGEQPQP-----PVKCSNFFANHWKGLVVFLV--PLLCLPVML 58
            |::.....|:.|..|.:.|.:    |..|     |:.    ||....|::..:.  |.|.:...|
E. coli   109 MSSTGVVAIFIPVVLSVAMRM----QTSPSRLMMPLS----FAGLISGMMTLVATPPNLVVNSEL 165

  Fly    59 LNEG----AEFRCMYLLLVMAIFWVTEALPLYVTSMIPIVAFPIMGIMSSDQT---CRLYFKD-- 114
            |.||    :.|....:.||:.:..:     ||:.    ::.|.:.|...:.|.   .|..|:|  
E. coli   166 LREGYHGFSFFSVTPIGLVVLVLGI-----LYML----VMRFMLKGDTQTPQREGWTRRTFRDLI 221

  Fly   115 ----------TLVMFMGGIMVALAVEYCNLHKRLALRVI-------------QIVGCSPRRLHFG 156
                      .|.:..|..|:...::...|.:|....||             .:.|.|..|....
E. coli   222 REYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVNGVSEFRARDV 286

  Fly   157 LIM--------VTMFLS-----------MWISNAACTAMMCPIIQAVLEELQAQGVCKINHEPQY 202
            |::        :..|.|           .:.|:.|....|..|......||..:.|.:|....:|
E. coli   287 LLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPESELIGKSVREIGFRTRY 351

  Fly   203 QI-VGGNKKNNEDEPPYPTKITLCYYLGIAYASSLGGCGTIIGTATNLTFKGIYEARFKNSTEQM 266
            .: |.|.|:|                 |:|...||.....::|.                     
E. coli   352 GLNVVGLKRN-----------------GVALEGSLADEPLLLGD--------------------- 378

  Fly   267 DFPTFMFYSVPSMLVYTLLTFVFLQWHFMGLWRPKSKEAQEVQRGREGADVAKKVIDQRYKDLGP 331
                              :..|...|..:|:            ..::|.|.....:.:...:..|
E. coli   379 ------------------IILVVGNWKLIGM------------LAKQGRDFVALNLPEEVSEASP 413

  Fly   332 MSIHEIQVMILFIFMVVMYFTRKPGIFLGWADLLNSKDIRNSMPTIFVVVM-----CFMLPANYA 391
            ........:...:.||.:..|               .:|.|.:..|...::     |....:.|.
E. coli   414 AHSQAPHAIFCLVLMVALMLT---------------DEIPNPVAAIIACLLMGKFRCIDAESAYK 463

  Fly   392 FLRYCTRRGGPVPTGPTPSLITWKFIQTKVPWGLVFLLGGGFALAEGSKQSGMAKLIGNALIGLK 456
            .:.:             ||:|   .|...:|:.:.....||.|||          :.|...||..
E. coli   464 SIHW-------------PSII---LIVGMMPFAVALQKTGGVALA----------VKGLMDIGGG 502

  Fly   457 VLPNSVLLLVVILVAVFLTAFSSNVAIANIIIPVLAEMSLAIEIHPLYLILPAGLACSMAFHLPV 521
            ..|:.:|..:.:|.|| :..|.||.|.|.::.|:....:..:.:.|....:...:|.|.||..||
E. coli   503 YGPHMMLGCLFVLSAV-IGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPV 566

  Fly   522 STPPNALVAGYANIRTKDMAIAGIGPTIITIITLFVFCQTWGLVVYPNLNSFP 574
            |:|.|.||.|..|....|....|:..|||    :...|    :|:.|.|  ||
E. coli   567 SSPVNTLVLGPGNYSFSDFVKLGVPFTII----VMAVC----VVMIPML--FP 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IndyNP_730363.2 CitT 120..545 CDD:440239 83/462 (18%)
yfbSNP_416795.1 CitT 61..610 CDD:440239 122/638 (19%)
KhtT <214..289 CDD:440256 14/74 (19%)
KhtT <304..395 CDD:440256 21/158 (13%)

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