DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Indy and slc13a1

DIOPT Version :9

Sequence 1:NP_730363.2 Gene:Indy / 40049 FlyBaseID:FBgn0036816 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_954975.1 Gene:slc13a1 / 387592 ZFINID:ZDB-GENE-031222-3 Length:583 Species:Danio rerio


Alignment Length:603 Identity:196/603 - (32%)
Similarity:323/603 - (53%) Gaps:83/603 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 VKCSNFFANHW---KGLVVFLVPLLCLPVMLLNEGAEFRCMYLLLVMAIFWVTEALPLYVTSMIP 92
            ::||      |   |.|::...||..||:.|:.:..|..|.|:|::||::|:||.|||.||::||
Zfish     4 LRCS------WSALKPLIIISTPLAILPLPLVIKTKEAECAYVLILMAVYWMTEVLPLSVTALIP 62

  Fly    93 IVAFPIMGIMSSDQTCRLYFKDTLVMFMGGIMVALAVEYCNLHKRLALRVIQIVGCSPRRLHFGL 157
            .:.||:.|||.|.|....||||..::.:|.|.:|.::|...||:|:|||::..:|.:|..|..|.
Zfish    63 ALLFPLFGIMKSSQVASQYFKDFHLLLLGVICLATSIEKWGLHRRIALRLVTGLGVNPGMLMLGF 127

  Fly   158 IMVTMFLSMWISNAACTAMMCPIIQAVLEE-LQAQGVCKINHE--------PQYQIVGGNKKNNE 213
            ::...|||||:||.:..||:.||::||::: |.|......:|:        |..|:.....::::
Zfish   128 MVGCAFLSMWLSNTSTVAMVMPIVEAVIQQVLSASEEANKDHKGALNGISNPALQLEDIEAQHDQ 192

  Fly   214 DE--------------------------PPYPTK------------ITLCYYLGIAYASSLGGCG 240
            .|                          |||..|            ::||    |||:||:||..
Zfish   193 SEKIKSIEAGITEPEPTSEEHETAKAPTPPYSGKYRTREDHMMCKGLSLC----IAYSSSIGGLT 253

  Fly   241 TIIGTATNLTF-KGIYEARFKNSTEQMDFPTFMFYSVPSMLVYTLLTFVFLQWHFMGLWRPKSKE 304
            |:.||:|||.| :.||:  :......::|..:....:|..::..:|:::||.|.::|    .:..
Zfish   254 TLSGTSTNLIFAEYIYQ--YYPECTIVNFGNWFVLCLPICIIMLILSWLFLHWMYLG----SNFR 312

  Fly   305 AQEVQRGR-EGADVAKKVIDQRYKDLGPMSIHEIQVMILFIFMVVMYFTRKPGIFLGWADLLNSK 368
            |....|.| |...:..:|:...|..|||:|..||..:|:||.|.:::|||.||...||:.|.:..
Zfish   313 ASLCSRQRTEKEKITARVLRDHYNSLGPISWQEIVTLIIFILMAILWFTRNPGFMPGWSSLFSDN 377

  Fly   369 DIRNSMPTIFVVV--MCFMLPANYAFLRYCTRRGGPVPTGPTPSLITWKFIQTKVPWGLVFLLGG 431
            ....:..|:.:::  :.|:||::            .:......:|||||..|..:||.:..|:||
Zfish   378 PGYATDATVALLLGFLFFLLPSH------------KLNADHYEALITWKDFQACMPWEISLLVGG 430

  Fly   432 GFALAEGSKQSGMAKLIGNALIGLKVLPNSVLLLVVILVAVFLTAFSSNVAIANIIIPVLAEMSL 496
            |||||||:|.||::..:...|..|..||....:.:..|:...:|..:||.|...|.:|:||.::.
Zfish   431 GFALAEGTKISGLSSWVAELLTPLGSLPPLATVTIACLIVTSITEVASNAATMTIFLPILAPLAE 495

  Fly   497 AIEIHPLYLILPAGLACSMAFHLPVSTPPNALVAGYANIRTKDMAIAGIGPTIITIITLFVFCQT 561
            ||.::|||:::|..||.|.:|.||||.||||:|..|.::.:.||..||:|..:|.|:|:.:...|
Zfish   496 AIGVNPLYMLIPTALAVSFSFLLPVSNPPNAIVFTYGHLTSMDMVKAGLGVNVIGILTVLLALTT 560

  Fly   562 WGLVVYPNLNSFPEWAQI 579
            ||..:. .|:::|:||.:
Zfish   561 WGTPLL-KLDTYPDWAPV 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IndyNP_730363.2 SLC13_permease 68..545 CDD:238535 172/527 (33%)
dass 70..545 CDD:273267 171/525 (33%)
slc13a1NP_954975.1 ArsB_NhaD_permease 7..565 CDD:304373 191/585 (33%)
CitT 14..561 CDD:223547 185/568 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580398
Domainoid 1 1.000 381 1.000 Domainoid score I793
eggNOG 1 0.900 - - E1_COG0471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 396 1.000 Inparanoid score I1908
OMA 1 1.010 - - QHG57284
OrthoDB 1 1.010 - - D282824at33208
OrthoFinder 1 1.000 - - FOG0000298
OrthoInspector 1 1.000 - - mtm6448
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10283
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X273
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.870

Return to query results.
Submit another query.