DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Indy and Slc13a3

DIOPT Version :9

Sequence 1:NP_730363.2 Gene:Indy / 40049 FlyBaseID:FBgn0036816 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_473396.1 Gene:Slc13a3 / 114644 MGIID:2149635 Length:600 Species:Mus musculus


Alignment Length:585 Identity:204/585 - (34%)
Similarity:332/585 - (56%) Gaps:45/585 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 LVVFLVPLLCLPVMLLNEGAEFRCMYLLLVMAIFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTC 108
            ||:.||||..||::......|.||:|::|:||::|.||||||.||:::||:.||.|||:.|.:.|
Mouse    18 LVLLLVPLALLPILFALPPKEGRCLYVILLMAVYWCTEALPLSVTALLPIILFPFMGILPSSKVC 82

  Fly   109 RLYFKDTLVMFMGGIMVALAVEYCNLHKRLALRVIQIVGCSPRRLHFGLIMVTMFLSMWISNAAC 173
            ..||.||..:|:.|:::|.|:|..|||:|:||:|:.:||..|.||..|:::.|.|||||:||.|.
Mouse    83 PQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKVLMLVGVQPARLILGMMVTTSFLSMWLSNTAS 147

  Fly   174 TAMMCPIIQAVLEEL---------------------QAQGVCKINHEPQY--QIVGGNKKNNE-- 213
            ||||.||..|:|:.|                     |..|:..:..|.|:  ...||:.::.|  
Mouse   148 TAMMLPIASAILKSLFGQREARKDLPREGDESTAAVQGNGLRTVPTEMQFLASSEGGHTEDAEAP 212

  Fly   214 -------DEPPYPTKITLCYYLGIAYASSLGGCGTIIGTATNLTFKGIYEARFKNSTEQMDFPTF 271
                   .|..:...|...:.:.|.|::|:||..|:.|||.||...|..::.|. ..:.::|.::
Mouse   213 MELPDDSKEEEHRRNIWKGFLISIPYSASIGGTATLTGTAPNLILLGQLKSFFP-QCDVVNFGSW 276

  Fly   272 MFYSVPSMLVYTLLTFVFLQWHFMGL-WRPKSKEAQEVQRGREGADVAKKVIDQRYKDLGPMSIH 335
            ..::.|.||::.|:.::::.:.:.|: ||...|:..:::...|  |.||.||.:.:::|||:...
Mouse   277 FIFAFPLMLLFLLVGWLWISFLYGGMSWRSWRKKKSKIRADAE--DQAKAVIQEEFQNLGPIKFA 339

  Fly   336 EIQVMILFIFMVVMYFTRKPGIFLGWADLLNSKDIRNSMPTIFVVVMCFMLPANYAFLRYCTRRG 400
            |..|.|||....::.|:|.|....|||.|.....:.:::..:.:|.:.|..|:....|::..  .
Mouse   340 EQAVFILFCTFAILLFSRDPKFIPGWASLFAPGFVSDAVTGVAIVTILFFFPSQKPSLKWWF--D 402

  Fly   401 GPVPTGPTPSLITWKFIQTKVPWGLVFLLGGGFALAEGSKQSGMAKLIGNALIGLKVLPNSVLLL 465
            ...|...|..|::||..|..|||.::.|||||||:|:|.::||::..||..|..|:.:|..:.:|
Mouse   403 FKAPNSETEPLLSWKKAQETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVL 467

  Fly   466 VVILVAVFLTAFSSNVAIANIIIPVLAEMSLAIEIHPLYLILPAGLACSMAFHLPVSTPPNALVA 530
            ::.:|..|.|.|:||.|...|.:|||||:::.:.:|||||::|..:.||.||.||||||||::..
Mouse   468 LITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVGCSYAFMLPVSTPPNSIAF 532

  Fly   531 GYANIRTKDMAIAGIGPTIITIITLFVFCQTWGLVVYPNLNSFPEWAQIYAA------AALGNKT 589
            ...::..|||...|:...::.::.|.:...||...:: .|.:||:||..:||      .||.|.|
Mouse   533 STGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIF-QLGTFPDWANTHAANATALPPALTNNT 596

  Fly   590  589
            Mouse   597  596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IndyNP_730363.2 SLC13_permease 68..545 CDD:238535 178/509 (35%)
dass 70..545 CDD:273267 177/507 (35%)
Slc13a3NP_473396.1 dass 31..565 CDD:273267 184/538 (34%)
SLC13_permease 42..556 CDD:238535 179/518 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167836883
Domainoid 1 1.000 383 1.000 Domainoid score I822
eggNOG 1 0.900 - - E1_COG0471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 392 1.000 Inparanoid score I1967
Isobase 1 0.950 - 0.875 Normalized mean entropy S3349
OMA 1 1.010 - - QHG57284
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000298
OrthoInspector 1 1.000 - - mtm8724
orthoMCL 1 0.900 - - OOG6_101290
Panther 1 1.100 - - O PTHR10283
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X273
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.750

Return to query results.
Submit another query.