DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Indy and slc13a4

DIOPT Version :9

Sequence 1:NP_730363.2 Gene:Indy / 40049 FlyBaseID:FBgn0036816 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_005164560.1 Gene:slc13a4 / 100038771 ZFINID:ZDB-GENE-070424-71 Length:635 Species:Danio rerio


Alignment Length:642 Identity:202/642 - (31%)
Similarity:325/642 - (50%) Gaps:122/642 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 KGLVVFLVPLLCLPVMLLNEGAEFRCMYLLLVMAIFWVTEALPLYVTSMIPIVAFPIMGIMSSDQ 106
            |.::|.::||..||:.|::..:|..|.|:|:|.|::||:||:||...:::|...:|:.|::.|.:
Zfish    19 KLILVVMIPLSLLPLPLIHPCSESSCAYVLIVTAVYWVSEAVPLGAAALVPAFLYPLFGVLKSSE 83

  Fly   107 TCRLYFKDTLVMFMGGIMVALAVEYCNLHKRLALRVIQIVGCSPRRLHFGLIMVTMFLSMWISNA 171
            ....|||||.::.||.|.:|.::|..|||||:|||::.|.|..|..|..|.:..|:|||||:||.
Zfish    84 VASEYFKDTTLLLMGVICLAASIEKWNLHKRIALRMVMIAGAKPGMLVLGFMCCTVFLSMWLSNT 148

  Fly   172 ACTAMMCPIIQAVLEELQAQGVCKINHEPQ--------------------YQIVG-GNKKN---- 211
            :.|||:.||.:|||::|...|:.....:.|                    .:::. .|:||    
Zfish   149 STTAMVMPIAEAVLQQLICTGIADSQEDSQDLTQDEESDKEENLESSKNHLELLDCKNEKNEVCM 213

  Fly   212 -NED-----------------------EPP----------------YPTK----ITLCYYLGIAY 232
             ||:                       |.|                ||||    |..|..|.|.|
Zfish   214 MNEELNGLSLKPGFGPNFSRESNGYLPEAPISIPVPKKPKIRRDSLYPTKRDHMICKCLTLSITY 278

  Fly   233 ASSLGGCGTIIGTATNLTFKGIYEARFKNSTEQMDFPTFMFYSVPSMLVYTLLTFVFLQWHFMGL 297
            |:::||..||.||:|||.|...:..|:..: :.::|.|:..:|:|..|:..:||:::|.:.|:|.
Zfish   279 AATIGGLITITGTSTNLIFAEQFNNRYPEA-KVINFGTWFIFSLPIALIMLILTWIWLHFLFLGC 342

  Fly   298 -------WRPKSKEAQEVQRGREGADVAKKVIDQRYKDLGPMSIHEIQVMILFIFMVVMYFTRKP 355
                   ...|.|..:|:        :::|.|.:.|:.|||:|..|:...|.||.|.|::|||:|
Zfish   343 NFRETCSLSKKRKTRREI--------LSEKRIHEEYQKLGPISYPEVVTGIFFILMTVLWFTREP 399

  Fly   356 GIFLGWADLLNSKDIRNSMPTIFVVV--MCFMLPANYAFLRYCTRRGGPVPTG------------ 406
            |...||..|...|..|.. .|:.|::  :.|::||.           .|.|:.            
Zfish   400 GFVPGWTSLFEKKGYRTD-ATVSVLLGFLLFLIPAR-----------KPWPSAFSSQSKDDEDED 452

  Fly   407 ----PTPSLITWKFIQTKVPWGLVFLLGGGFALAEGSKQSGMAKLIGNALIGLKVLPNSVLLLVV 467
                |...:||||..|..:||.:|.|:|||:|||.|.|.||::..||..|..:..||...:.|:.
Zfish   453 EEQDPLAPMITWKDFQRLMPWEIVILVGGGYALAAGCKVSGLSMWIGRQLEPMSGLPPWAVTLLA 517

  Fly   468 ILVAVFLTAFSSNVAIANIIIPVLAEMSLAIEIHPLYLILPAGLACSMAFHLPVSTPPNALVAGY 532
            .|:...:|.|:||.|...:.:|:|:.:|..::::||:.::||.:..|....|||..||||:|..|
Zfish   518 CLLVSAVTEFASNPATLTVFLPILSALSETLQMNPLHTLIPATMCVSFGVMLPVGNPPNAIVFSY 582

  Fly   533 ANIRTKDMAIAGIGPTIITIITLFVFCQTWGLVVYPNLNSFPEWAQIYAAAALGNKT 589
            .:::..||..||.|..:|.:..:.:...|||..:: :|:.||.|      ||:.|.|
Zfish   583 GHVQISDMVKAGFGVNLIGVFVVMLAILTWGEPLF-HLSQFPTW------AAMRNVT 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IndyNP_730363.2 SLC13_permease 68..545 CDD:238535 179/570 (31%)
dass 70..545 CDD:273267 178/568 (31%)
slc13a4XP_005164560.1 ArsB_NhaD_permease 12..617 CDD:304373 194/618 (31%)
dass 47..612 CDD:273267 181/585 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580410
Domainoid 1 1.000 381 1.000 Domainoid score I793
eggNOG 1 0.900 - - E1_COG0471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 396 1.000 Inparanoid score I1908
OMA 1 1.010 - - QHG57284
OrthoDB 1 1.010 - - D282824at33208
OrthoFinder 1 1.000 - - FOG0000298
OrthoInspector 1 1.000 - - mtm6448
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10283
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2228
SonicParanoid 1 1.000 - - X273
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.900

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