DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz-f1 and Nr5a2

DIOPT Version :10

Sequence 1:NP_524143.2 Gene:ftz-f1 / 40045 FlyBaseID:FBgn0001078 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_068510.1 Gene:Nr5a2 / 60349 RGDID:68353 Length:560 Species:Rattus norvegicus


Alignment Length:556 Identity:217/556 - (39%)
Similarity:302/556 - (54%) Gaps:110/556 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   496 EVIDFKHL-------FEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHID 553
            :|..||.:       .||||||||||||||||||||||||||||||||||:|.|||:..::|.||
  Rat    88 QVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNQKRYTCIENQNCQID 152

  Fly   554 KTQRKRCPYCRFQKCLEVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQ---VMRQRQLALQAL 615
            ||||||||||||:||::|||||||||||||||||||||||||||||.|.|   ::|...|.|:|:
  Rat   153 KTQRKRCPYCRFKKCIDVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAM 217

  Fly   616 RNSMGPDIKPTPISPGYQQAYPNMNIKQEIQIPQVSSLTQSPDSSP---SPIAIALGQVNASTGG 677
              |......|:.::...|..:   :..:.:.:..|:......|.||   |||::.:         
  Rat   218 --SQVIQAMPSDLTSAIQNIH---SASKGLPLSHVALPPTDYDRSPFVTSPISMTM--------- 268

  Fly   678 VIATPMNAGTGGSGGGGLNGPSSVGN-GNSSNGSSNGNNNSSTGNGTSGGGGGNNAGGGGGGTNS 741
                |.:        |.|:|....|: .|.:..|...:..||:.....             |.:.
  Rat   269 ----PPH--------GSLHGYQPYGHFPNRAIKSEYPDPYSSSPESMM-------------GYSY 308

  Fly   742 NDGLHRNGGNGNSSCHEAGIGSLQNTADSKLCFDSGTHPSSTADALIEPLRVSPMIREFVQSIDD 806
            .||...:.                              |:|....::|.|:..|         |:
  Rat   309 MDGYQTSS------------------------------PASIPHLILELLKCEP---------DE 334

  Fly   807 REWQTQLFALLQKQTYN---QVEVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQH 868
            .:.|.::.|.||::..|   |.::..|.|:||:.||.|||.|:|||:::||::|||||||||||:
  Rat   335 PQVQAKIMAYLQQEQNNRNRQEKLSAFGLLCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQN 399

  Fly   869 SWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSL---------GLLGVPQLGDYFNELQNKLQ 924
            .||::|:|||::.::.:|......|..|:..:..|:         .||.:.|      ||..:|:
  Rat   400 CWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSSIISNTEVAFNNLLSLAQ------ELVVRLR 458

  Fly   925 DLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILP 989
            .|:||..::||:|||:|.:..|:.:.|.:.|....:.|.||||||||..||...:||..|:..||
  Rat   459 SLQFDQREFVCLKFLVLFSSDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQQTEKFGQLLLRLP 523

  Fly   990 EIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHAKR 1025
            ||.|::.:.||:||.||..|..|...||:|||||||
  Rat   524 EIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftz-f1NP_524143.2 NR_DBD_Lrh-1_like 508..600 CDD:143541 80/91 (88%)
NR_LBD_Ftz-F1_like 794..1024 CDD:132742 95/241 (39%)
Nr5a2NP_068510.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 17..54
NR_DBD_Lrh-1_like 107..199 CDD:143541 80/91 (88%)
C-terminal extension (CTE). /evidence=ECO:0000250|UniProtKB:O00482 173..188 14/14 (100%)
FTZ-F1 box. /evidence=ECO:0000250|UniProtKB:O00482 189..208 12/18 (67%)
NR_LBD_Lrh-1 320..560 CDD:132754 100/255 (39%)
AF-2. /evidence=ECO:0000255|PROSITE-ProRule:PRU01189 547..558 6/10 (60%)
Blue background indicates that the domain is not in the aligned region.

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