DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz-f1 and nr5a2

DIOPT Version :9

Sequence 1:NP_524143.2 Gene:ftz-f1 / 40045 FlyBaseID:FBgn0001078 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_001011100.1 Gene:nr5a2 / 496513 XenbaseID:XB-GENE-478074 Length:501 Species:Xenopus tropicalis


Alignment Length:604 Identity:228/604 - (37%)
Similarity:312/604 - (51%) Gaps:128/604 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   440 PQAASSSGNNGNPNAGHMSSGSVGNGSGGAGNGGAGGNSGPGNPMGGTSATPGHGGEVIDFKHLF 504
            |:|...|.::|  ..|||                      |.|.........|:     .:....
 Frog     7 PEALGLSRSHG--EQGHM----------------------PENMQASQFKMMGY-----SYDEEL 42

  Fly   505 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPYCRFQKCL 569
            ||:|||||||||||||||||||||||||||||||.|.|||:..:||.||||||||||||||||||
 Frog    43 EEMCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQSCQIDKTQRKRCPYCRFQKCL 107

  Fly   570 EVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQ---VMRQRQLALQALRNSMGPDIKPTPISPG 631
            .|||||||||||||||||||||||||||||.|.|   ::|...|.|:|    ||..|:..|....
 Frog   108 SVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEA----MGQVIQSIPTDLT 168

  Fly   632 YQQAYPNM-NIKQEIQIPQVSSLTQSPDSSP---SPIAIALGQVNASTGGVIATPMNAGTGGSGG 692
            ...|..|: :..:.:.:...:......|.||   |||::|:             |.:        
 Frog   169 ISSAIQNIHSASKGLPLNHAALPPSDYDRSPFVTSPISMAM-------------PPH-------- 212

  Fly   693 GGLNGPSSVGNGNSSNGSSNGNNNSSTGNGTSGGGGGNNAGGGGGGTNSNDGLHRNGGNGNSSCH 757
            |.|.|..:.|:..|.                                    .:.....:..:|..
 Frog   213 GSLQGYQAYGHFPSR------------------------------------AIKSEYPDPYTSSP 241

  Fly   758 EAGIG-SLQNTADSKLCFDSGTHPSSTADALIEPLRVSPMIREFVQSIDDREWQTQLFALLQKQT 821
            |:.:| |..::..|       :.||:....::|.|:..|         |:.:.|.::.|.||::.
 Frog   242 ESIMGYSYMDSYQS-------SSPSNIPHLIVELLKCEP---------DEPQVQGKIMAYLQQEQ 290

  Fly   822 YNQVEVD---LFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRI 883
            .|:.:.|   .|.||||:.||.|||.|:|||:::||::|||||||||||:.||::|:|||:..::
 Frog   291 ANRSKHDKLNTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIFRQV 355

  Fly   884 HNGLPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQN-------KLQDLKFDMGDYVCMKFLIL 941
            .:|......|..||..:...:    |.|.|...|.|.:       ||:.|:||:.::||:|||:|
 Frog   356 LHGKEGSILLVTGQQVDYSVI----VTQAGATLNNLMSHAQDLVAKLRSLQFDLREFVCLKFLVL 416

  Fly   942 LNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAMAVRGEDHLYTKH 1006
            .:..|:.:.|.:.|....:.:.|||||||:..||...|||..|:..||||.|::::.|::||.||
 Frog   417 FSLDVKNLENYQLVEGVQEQINAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKH 481

  Fly  1007 CAGSAPTQTLLMEMLHAKR 1025
            ..|..|...||:|||||||
 Frog   482 LNGDVPCNNLLIEMLHAKR 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftz-f1NP_524143.2 NR_DBD_Lrh-1_like 508..600 CDD:143541 83/91 (91%)
NR_LBD_Ftz-F1_like 794..1024 CDD:132742 95/239 (40%)
nr5a2NP_001011100.1 NR_DBD_Lrh-1_like 46..138 CDD:143541 83/91 (91%)
NR_LBD_Lrh-1 261..501 CDD:132754 100/253 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 149 1.000 Domainoid score I4387
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 383 1.000 Inparanoid score I2000
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D278717at33208
OrthoFinder 1 1.000 - - FOG0002223
OrthoInspector 1 1.000 - - otm48202
Panther 1 1.100 - - LDO PTHR24086
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1468
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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