DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz-f1 and nhr-38

DIOPT Version :10

Sequence 1:NP_524143.2 Gene:ftz-f1 / 40045 FlyBaseID:FBgn0001078 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_501728.2 Gene:nhr-38 / 191720 WormBaseID:WBGene00003629 Length:355 Species:Caenorhabditis elegans


Alignment Length:160 Identity:52/160 - (32%)
Similarity:83/160 - (51%) Gaps:16/160 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   505 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHI--DKTQR-KRCPYCRFQ 566
            |.:|.:|.||..|||:|.::|.:|..||:|:|.::|||:| :.|.|.|  |.|:| ..|.:|||.
 Worm    30 EMICSICSDKAEGYHFGAISCAACGAFFRRSVSDQKVYSC-SNRQCSIVHDPTKRGGSCRFCRFL 93

  Fly   567 KCLEVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRNSMGPDIKPTPISPG 631
            ||:..||..:.|:|.|....:.....:|:......:.::.|    :.|.|.|:..:   .||...
 Worm    94 KCVSSGMMPQDVKAKRTSSSQQNVTSLYRNMNQSSILLIDQ----IIAFRRSIAAE---RPIFDL 151

  Fly   632 YQQAYPNMNIK----QEIQIPQVSSLTQSP 657
            ..::....|:|    ||.:|.:..| |.||
 Worm   152 ISRSTTRTNLKISLHQEYEIMRRIS-TGSP 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftz-f1NP_524143.2 NR_DBD_Lrh-1_like 508..600 CDD:143541 36/94 (38%)
NR_LBD_Ftz-F1_like 794..1024 CDD:132742
nhr-38NP_501728.2 ZnF_C4 32..102 CDD:197701 32/70 (46%)
Blue background indicates that the domain is not in the aligned region.

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