DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz-f1 and nhr-258

DIOPT Version :10

Sequence 1:NP_524143.2 Gene:ftz-f1 / 40045 FlyBaseID:FBgn0001078 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_501348.4 Gene:nhr-258 / 182927 WormBaseID:WBGene00016126 Length:398 Species:Caenorhabditis elegans


Alignment Length:78 Identity:33/78 - (42%)
Similarity:44/78 - (56%) Gaps:1/78 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   502 HLFEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPYCRFQ 566
            |.| .:|.||.|.....|||.:.|.||||||:|...:.|.:.|.....|.|.|..|..|..||::
 Worm     9 HQF-SICRVCDDSNGQPHYGTICCPSCKGFFRRVYMSDKKFECYRGNMCVIQKGTRNICRACRYK 72

  Fly   567 KCLEVGMKLEAVR 579
            |||:|||.::.:|
 Worm    73 KCLQVGMNVKDIR 85

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftz-f1NP_524143.2 NR_DBD_Lrh-1_like 508..600 CDD:143541 31/72 (43%)
NR_LBD_Ftz-F1_like 794..1024 CDD:132742
nhr-258NP_501348.4 ZnF_C4 13..80 CDD:197701 29/66 (44%)
HOLI 192..356 CDD:214658
Blue background indicates that the domain is not in the aligned region.

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