DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz-f1 and nhr-48

DIOPT Version :10

Sequence 1:NP_524143.2 Gene:ftz-f1 / 40045 FlyBaseID:FBgn0001078 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_001362159.1 Gene:nhr-48 / 181661 WormBaseID:WBGene00003638 Length:833 Species:Caenorhabditis elegans


Alignment Length:440 Identity:99/440 - (22%)
Similarity:149/440 - (33%) Gaps:130/440 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   311 PTTTTSMSNTANPTRSSLHSIEELAASSCAPRAASPNSNHTSSASTTPQQQQQQQHHMQSGNHSG 375
            |:..:..:|..|..||:.       .:||            |:|...|.|...|  :.|...:..
 Worm     2 PSNNSVATNMYNTRRSAY-------MNSC------------STAMELPPQSLHQ--NWQDTEYVN 45

  Fly   376 SNLSSD---DESMSEDEFGLEIDDNGGYQDTTSSHSQQSGGGGGGGGGNLLNGSSGGSSAGGGYM 437
            :..|||   |.||..|:     .|:..|:|                     .||.||:|.||   
 Worm    46 TTCSSDMNSDMSMYNDD-----KDDPFYED---------------------EGSGGGTSGGG--- 81

  Fly   438 LLPQAASSSGNNGNPNAGHMSSGSVGNGSGGAGNGGAGGNSGPGNPMGGTSATPGHGGEVIDFKH 502
                 ..||....|                                     .|...||...:.|.
 Worm    82 -----KKSSRKRAN-------------------------------------TTSSSGGNEKESKR 104

  Fly   503 LFEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPYCRFQK 567
            ...::|.|||||...|::.::||||||.||:|....:|...|.....|.|:...|:.|..||..|
 Worm   105 TANKVCRVCGDKAFSYNFNVITCESCKAFFRRNANKEKEIRCPFNEQCEINMVSRRFCQRCRLTK 169

  Fly   568 CLEVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRNSMGPDIKPTPISPGY 632
            |..||||.|.:.::..|..:.:   ..:.:|.|:||....|.|....:.:.........| :|.:
 Worm   170 CFAVGMKKEWIMSEEARLEKKQ---RVEENRERRLQDAMNRALEEACMEDESENSYDEAP-APSH 230

  Fly   633 QQAYPNMNIKQEIQIPQVSSLTQSPDSSPSPIAIALGQVNASTGGVIATPMNAGTGGSGGGGLN- 696
            |     |:::|.:      :...:|..|...:...||              :.|........:| 
 Worm   231 Q-----MSVRQYL------ANDDAPHKSSDEVQPHLG--------------HHGYNQKEDKMMNF 270

  Fly   697 ---GPSSVGNGNSSNGSSNGNNN--SSTGNGTSGGGGGNNAGGGGGGTNS 741
               |||..|..|.....|..:|:  ||:...||...|.......|...::
 Worm   271 YQDGPSDQGYSNHDFDYSLPSNSCASSSQLDTSVNCGATTIADNGASPSN 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftz-f1NP_524143.2 NR_DBD_Lrh-1_like 508..600 CDD:143541 33/91 (36%)
NR_LBD_Ftz-F1_like 794..1024 CDD:132742
nhr-48NP_001362159.1 NR_DBD_CAR 108..200 CDD:143524 33/94 (35%)
Blue background indicates that the domain is not in the aligned region.

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