DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ftz-f1 and nhr-3

DIOPT Version :10

Sequence 1:NP_524143.2 Gene:ftz-f1 / 40045 FlyBaseID:FBgn0001078 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_510423.1 Gene:nhr-3 / 181551 WormBaseID:WBGene00003602 Length:463 Species:Caenorhabditis elegans


Alignment Length:242 Identity:79/242 - (32%)
Similarity:108/242 - (44%) Gaps:26/242 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   483 PMGGTSATPGHGGEVIDFKHLFEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAE 547
            |..|..:..|..|  ||.:.  ..:|.||.|:.||.|||::.|..|||||:|||:..|.|.|...
 Worm    32 PELGEYSPSGENG--IDGEE--STICSVCCDEASGRHYGVVACFGCKGFFRRTVRAGKNYVCRYS 92

  Fly   548 RSCHIDKTQRKRCPYCRFQKCLEVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQVMRQRQLAL 612
            :.|.|||..|..|..|||||||||||:.:|:|.||.:.||.|..........:|:.|  ...|..
 Worm    93 KKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKTGRQKNPRRNTEGSIKKVSV--GSILGD 155

  Fly   613 QALRNSMGPDIKPTPISPGYQQAYPNMNIKQE-IQIPQVSSLTQSPDSSPSPIAIALGQVNASTG 676
            ....|....|......||..:.....|:::.. |....:::||:..:     |.|.| |.|..|.
 Worm   156 LPCLNKFKDDSDDAATSPSSRADSAPMDLRPSFIDESVLTTLTEIEN-----IVIQL-QDNFETN 214

  Fly   677 GVIATPMNAGTGGSGGGGLNGPSSVG-----NGNSSNGSSNGNNNSS 718
            .....||        |..:..||.:.     |.|.:.|.::.|..||
 Worm   215 QQSLPPM--------GEAITKPSLIAARTLLNFNGAKGVADANCVSS 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftz-f1NP_524143.2 NR_DBD_Lrh-1_like 508..600 CDD:143541 45/91 (49%)
NR_LBD_Ftz-F1_like 794..1024 CDD:132742
nhr-3NP_510423.1 NR_DBD_HNF4A 53..128 CDD:143518 41/74 (55%)
NR_LBD 249..432 CDD:132726 3/5 (60%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.