DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12477 and rnf141

DIOPT Version :9

Sequence 1:NP_649055.1 Gene:CG12477 / 40040 FlyBaseID:FBgn0036809 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_001001800.1 Gene:rnf141 / 308900 RGDID:1303154 Length:230 Species:Rattus norvegicus


Alignment Length:142 Identity:35/142 - (24%)
Similarity:52/142 - (36%) Gaps:37/142 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 YKAATAGEQGEAQAGATCTTVAVRPSGVATSADIVKGSSSVSSHVQPSWRSSFAR-SQDKKCGIC 103
            ||..|:...|.....:|    :..|.|         ..|||:|.....|.....: :.:::|.||
  Rat   107 YKDITSQAAGVLAQSST----SEEPDG---------NPSSVTSCQASLWMGRVKQLTDEEECCIC 158

  Fly   104 FETIMEKEGGDKRFGILPSCNHVFCFQCICTW--RHATQYAYQVTRACPECRVWSNFVCPSAFW- 165
            .         |.|..::..|.|.||.:||..|  ||         |.||.||:  .....:..| 
  Rat   159 M---------DGRADLILPCAHSFCQKCIDKWSDRH---------RNCPICRL--QMTGANESWV 203

  Fly   166 VEEKVAKDQLIN 177
            |.:...:|.:.|
  Rat   204 VSDAPTEDDMAN 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12477NP_649055.1 RING 99..153 CDD:238093 17/55 (31%)
rnf141NP_001001800.1 rad18 129..>207 CDD:273165 27/106 (25%)
RING-HC_RNF141 154..192 CDD:319459 17/55 (31%)
RING-HC finger (C3HC4-type) 155..191 CDD:319459 17/53 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1039
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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