DRSC/TRiP Functional Genomics Resources

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Protein Alignment LMO1 and Lmx1a

DIOPT Version :10

Sequence 1:XP_006718291.1 Gene:LMO1 / 4004 HGNCID:6641 Length:193 Species:Homo sapiens
Sequence 2:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster


Alignment Length:116 Identity:46/116 - (39%)
Similarity:65/116 - (56%) Gaps:6/116 - (5%)


- Green bases have known domain annotations that are detailed below.


Human    61 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNC 125
            |.||.:||.||:|:...|..|||.||  |||.|.: ::..|.|.:.:.:.|:.||.||||.  .|
  Fly   275 CEGCGQKIHDRFLMNVGDANWHEQCL--ACCYCGM-QLHHTCYVRNSKLYCKMDYDRLFGV--KC 334

Human   126 AACSKLIPAFEMVMRARDN-VYHLDCFACQLCNQRFCVGDKFFLKNNMILC 175
            ::|...|...|:|||...| |:||.||.|..|......|::|.|::..:.|
  Fly   335 SSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFC 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LMO1XP_006718291.1 LIM1_LMO1_LMO3 61..115 CDD:188774 21/53 (40%)
LIM2_LMO1_LMO3 125..179 CDD:188775 19/52 (37%)
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 22/54 (41%)
LIM 333..388 CDD:413332 19/53 (36%)
Homeodomain 425..481 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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