DRSC/TRiP Functional Genomics Resources

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Protein Alignment LMO1 and CG4328

DIOPT Version :10

Sequence 1:XP_006718291.1 Gene:LMO1 / 4004 HGNCID:6641 Length:193 Species:Homo sapiens
Sequence 2:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster


Alignment Length:168 Identity:58/168 - (34%)
Similarity:85/168 - (50%) Gaps:13/168 - (7%)


- Green bases have known domain annotations that are detailed below.


Human    14 PAGEPRGRAWSDLELGEVDVLGWKSGLGGAHWGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALD 78
            ||..|.........||    :...||: |...|:.|.|  |:..|  ||.|.:.|.|||:::.::
  Fly   161 PAAPPSASNTPQAPLG----MASNSGM-GMELGLAMAS--PQLSQ--CAHCCQPICDRYIMRVVE 216

Human    79 KYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARD 143
            ..:||.||||..|...|..   :.|.:...:.||.||.||: ...:|..|...|.|.|:|||..:
  Fly   217 NSFHEGCLKCTACSLHLVH---SCYAREGKLYCRVDYERLY-IRNHCLGCGLKIAADELVMRCHE 277

Human   144 NVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEE 181
            ||:||.||||.:|......|:::.:|...:.|:.|||:
  Fly   278 NVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEK 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LMO1XP_006718291.1 LIM1_LMO1_LMO3 61..115 CDD:188774 18/53 (34%)
LIM2_LMO1_LMO3 125..179 CDD:188775 20/53 (38%)
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 19/54 (35%)
LIM 259..313 CDD:413332 20/53 (38%)
COG5576 <332..439 CDD:227863
HOX 341..393 CDD:197696
Blue background indicates that the domain is not in the aligned region.

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