DRSC/TRiP Functional Genomics Resources

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Protein Alignment LMO1 and Awh

DIOPT Version :10

Sequence 1:XP_006718291.1 Gene:LMO1 / 4004 HGNCID:6641 Length:193 Species:Homo sapiens
Sequence 2:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster


Alignment Length:136 Identity:48/136 - (35%)
Similarity:71/136 - (52%) Gaps:3/136 - (2%)


- Green bases have known domain annotations that are detailed below.


Human    55 KGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLF 119
            |.:.:.||.|...|.||:.|:.....||..||:|..|.|.|....| .:.:...:.|:.||.:.|
  Fly     2 KTELRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQS-CFIRERQVYCKADYSKNF 65

Human   120 GTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 184
            |  ..|:.|.:.|.|.:.|.|||:.|:||.||||..|.::...|::|.|.::.:||:..|.|...
  Fly    66 G--AKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVE 128

Human   185 NGTFES 190
            .||..|
  Fly   129 GGTTSS 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LMO1XP_006718291.1 LIM1_LMO1_LMO3 61..115 CDD:188774 17/53 (32%)
LIM2_LMO1_LMO3 125..179 CDD:188775 21/53 (40%)
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 17/53 (32%)
LIM2_AWH 69..123 CDD:188765 21/53 (40%)
Homeodomain 149..205 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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