DRSC/TRiP Functional Genomics Resources

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Protein Alignment LMO1 and ap

DIOPT Version :10

Sequence 1:XP_006718291.1 Gene:LMO1 / 4004 HGNCID:6641 Length:193 Species:Homo sapiens
Sequence 2:NP_724428.1 Gene:ap / 35509 FlyBaseID:FBgn0267978 Length:469 Species:Drosophila melanogaster


Alignment Length:132 Identity:49/132 - (37%)
Similarity:77/132 - (58%) Gaps:2/132 - (1%)


- Green bases have known domain annotations that are detailed below.


Human    61 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNC 125
            |:||.|:|:||:.|.|::|.||..||:|..|...| |..|:.|::...|.|:.||...|||. .|
  Fly   148 CSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RC 210

Human   126 AACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFES 190
            :.|...|.:.|:|||||:.|:|::||.|.:|:.....||::.:.:.:|.|:..|...:...|..|
  Fly   211 SRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDTASS 275

Human   191 QV 192
            .:
  Fly   276 SM 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LMO1XP_006718291.1 LIM1_LMO1_LMO3 61..115 CDD:188774 22/53 (42%)
LIM2_LMO1_LMO3 125..179 CDD:188775 19/53 (36%)
apNP_724428.1 LIM1_Lhx2_Lhx9 148..201 CDD:188755 22/53 (42%)
LIM2_Lhx2_Lhx9 206..264 CDD:188763 21/58 (36%)
Homeodomain 368..424 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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