DRSC/TRiP Functional Genomics Resources

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Protein Alignment LMO1 and Lim3

DIOPT Version :10

Sequence 1:XP_006718291.1 Gene:LMO1 / 4004 HGNCID:6641 Length:193 Species:Homo sapiens
Sequence 2:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster


Alignment Length:129 Identity:48/129 - (37%)
Similarity:80/129 - (62%) Gaps:6/129 - (4%)


- Green bases have known domain annotations that are detailed below.


Human    61 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNC 125
            |.||:..|.||::||.|::.||..||:|:.|.   |::....:.:...:.|:.|:.:.:||  .|
  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGT--KC 181

Human   126 AACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYEEGQLNGTF 188
            :||...||..::|.||:||||||.||.|.:|::....||:|:| ::..::|:.||||.:..|.:
  Fly   182 SACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLY 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LMO1XP_006718291.1 LIM1_LMO1_LMO3 61..115 CDD:188774 17/53 (32%)
LIM2_LMO1_LMO3 125..179 CDD:188775 23/54 (43%)
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 17/53 (32%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 23/54 (43%)
Homeodomain 257..313 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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