DRSC/TRiP Functional Genomics Resources

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Protein Alignment LMO1 and tup

DIOPT Version :10

Sequence 1:XP_006718291.1 Gene:LMO1 / 4004 HGNCID:6641 Length:193 Species:Homo sapiens
Sequence 2:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster


Alignment Length:128 Identity:46/128 - (35%)
Similarity:70/128 - (54%) Gaps:5/128 - (3%)


- Green bases have known domain annotations that are detailed below.


Human    55 KGKQKGCAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 118
            |.:...|.||..:|.|:|:|: |.|..||..||||..|...|.| ..|.:.:.....|:|||:||
  Fly    48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRL 111

Human   119 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKN-NMILCQMDYE 180
            |||  .|..|.......:.||||:..::|::||.|..|.::...||:|.|:: ..:.|:.|::
  Fly   112 FGT--KCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LMO1XP_006718291.1 LIM1_LMO1_LMO3 61..115 CDD:188774 21/54 (39%)
LIM2_LMO1_LMO3 125..179 CDD:188775 16/54 (30%)
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 21/54 (39%)
LIM2_Isl 116..171 CDD:188760 16/54 (30%)
HOX 241..297 CDD:197696
Blue background indicates that the domain is not in the aligned region.

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