DRSC/TRiP Functional Genomics Resources

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Protein Alignment LMO1 and Lim1

DIOPT Version :10

Sequence 1:XP_006718291.1 Gene:LMO1 / 4004 HGNCID:6641 Length:193 Species:Homo sapiens
Sequence 2:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster


Alignment Length:134 Identity:46/134 - (34%)
Similarity:79/134 - (58%) Gaps:6/134 - (4%)


- Green bases have known domain annotations that are detailed below.


Human    51 SVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDY 115
            |..|.|....|||||:.|.|::||..|::.||..|::  ||:| |..:....:::.:.:.||.|:
  Fly    17 SEPPVGVGDPCAGCNKPILDKFLLNVLERAWHASCVR--CCEC-LQPLTDKCFSRESKLYCRNDF 78

Human   116 LRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF-LKNNMILCQMDY 179
            .|.:||  .|:.|.:.|...::|.:.||.|:||:||.|.:|.::...|::.: |.:|..:|:.||
  Fly    79 FRRYGT--KCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141

Human   180 EEGQ 183
            ..|:
  Fly   142 LLGK 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LMO1XP_006718291.1 LIM1_LMO1_LMO3 61..115 CDD:188774 19/53 (36%)
LIM2_LMO1_LMO3 125..179 CDD:188775 17/54 (31%)
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753 19/53 (36%)
LIM2_Lhx1_Lhx5 86..141 CDD:188761 17/54 (31%)
COG5576 185..324 CDD:227863
Homeodomain 248..304 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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