DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6893 and Shawn

DIOPT Version :10

Sequence 1:NP_001369058.1 Gene:CG6893 / 40038 FlyBaseID:FBgn0036807 Length:291 Species:Drosophila melanogaster
Sequence 2:NP_001027071.1 Gene:Shawn / 3772641 FlyBaseID:FBgn0031039 Length:387 Species:Drosophila melanogaster


Alignment Length:357 Identity:78/357 - (21%)
Similarity:129/357 - (36%) Gaps:100/357 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 KIRP-RWWSGGVAGA-IAQCFTAPFDLIEARMVVIKKDRGMASN--------LQQAI-------- 59
            :||| :..:....|| :..||..|.|:|:.|:..  :.:.:.||        |...|        
  Fly    36 RIRPLQQVASACTGAMVTACFMTPLDVIKTRLQA--QQQALLSNKCFLYCNGLMDHICPCGPDTP 98

  Fly    60 ----------------------RTHGFISLYDGLSAQLLRQLTYTSMRFHLYEMGKEHLDD---- 98
                                  ||.|..||:.|||..|:..|..|.:.|..||..|....|    
  Fly    99 NPAAAKPAPRFSGTIDAFIKISRTEGIGSLWSGLSPTLISALPSTIIYFVAYEQFKARFTDIHYK 163

  Fly    99 ----PAGLLDKV------LVAALAGCVAGVVG----TPMELINTRMQVNRALPKETRWNYRNVFD 149
                |..:...:      ||..|||....::.    :|:|||.|:||..|....|.....|.|..
  Fly   164 YTRRPDTIAHDIPHPIPFLVPLLAGVSGRILAVTCVSPVELIRTKMQSQRMTHAEMFGTIRQVVQ 228

  Fly   150 -----GLYR-----VTREEGFTKLYSGCFLSFMRSSLITISQNAAYDQAKQIYAEFFHMKHDNTL 204
                 ||:|     :.|:..|:.:|..|: .:::||...:....::..|                
  Fly   229 SQGVLGLWRGLPPTILRDVPFSGIYWTCY-EYLKSSFGVVEPTFSFSFA---------------- 276

  Fly   205 LHLISSVTAAFVCGP--IIKPIENLRY----------LRMVDSRRLINSISYMMRFGS-RGPFRG 256
            ...||...||.:..|  ::|..|.:.:          .:.|.::.:...::.:.|.|. ...|.|
  Fly   277 AGAISGSVAATITTPFDVVKTHEQIEFGEKFIFSDNPPKQVATKSVAMRLASIYRMGGVPAIFSG 341

  Fly   257 MVPYVLRMVPNTVITFLSFEQLRVNFGYIEIE 288
            :.|.:.::.|...|...|||..:..|.:..|:
  Fly   342 LGPRLFKVAPACAIMISSFEYGKSFFYHYNID 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6893NP_001369058.1 Mito_carr 20..96 CDD:395101 27/114 (24%)
Mito_carr 98..192 CDD:395101 28/121 (23%)
ShawnNP_001027071.1 Mito_carr 39..159 CDD:395101 28/121 (23%)
Mito_carr 178..265 CDD:395101 25/87 (29%)
Mito_carr 268..371 CDD:395101 20/118 (17%)

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