DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cyp12c1 and cyp26b1

DIOPT Version :9

Sequence 1:NP_001287109.1 Gene:Cyp12c1 / 40037 FlyBaseID:FBgn0036806 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001072655.1 Gene:cyp26b1 / 780112 XenbaseID:XB-GENE-991500 Length:511 Species:Xenopus tropicalis


Alignment Length:472 Identity:113/472 - (23%)
Similarity:192/472 - (40%) Gaps:125/472 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 CLIP---GLFGMPSTVFTFNVETFEKVYRTEGQWPVRGGAEPVIHYRNKRKDEF---FKNCMGLF 140
            |.:|   |..|.|....||:             |.::|.     .:::.|::::   ||.  .|.
 Frog    45 CKLPIPKGSMGFPLVGETFH-------------WILQGS-----DFQSSRREKYGNVFKT--HLL 89

  Fly   141 G------NGAEWGKNRSAVNPVLM-QH--------RNVAIYLKP---------MQRVNRQFVNRI 181
            |      .|||      .|..:|| :|        |:..:.|.|         :.|..|:..::|
 Frog    90 GRPLIRVTGAE------NVRKILMGEHHLVSTEWPRSTRMLLGPNSLANSIGDIHRHKRKVFSKI 148

  Fly   182 REIRDKES-----QEVPGDFM-------NTIN------HLTFESVATVALDRELGLLREANPPPE 228
            ......||     |.|..|.:       .:||      .|||.....|.|...|.       ..|
 Frog   149 FSHEALESYLPKIQLVIQDTLRVWSSNPESINVYCEAQKLTFRMAIRVLLGFRLS-------DEE 206

  Fly   229 ASKLFKNIEVLMDSFFDLGVRPSLYRYIPTPTYKKFSRAMDEIFDTCSMYVNQAIERIDRKSSQG 293
            .|:||:..:..:::.|.|.|.      :|...|::..||.:.:..:....:.:.::     ::||
 Frog   207 LSQLFQVFQQFVENVFSLPVD------VPFSGYRRGIRAREMLLKSLEKAIQEKLQ-----NTQG 260

  Fly   294 DSNDHKSVLEQLLQIDRKLAVVMAMDMLMGGV--------DTTSTAISGILLNLAKNPEKQQRLR 350
              .|:...|:.|::..::....:.|..|..|.        .||::|.:.:::.|.|:|...::||
 Frog   261 --KDYADALDILIESGKEHGKELTMQELKDGTLELIFAAYATTASASTSLIMQLLKHPSVLEKLR 323

  Fly   351 EEVLSKLTSLHS------EFTVEDMKSLPYLRAVIKESLRLYPVTFGNARSAGADVVLDGYRIPK 409
            ||:... :.||:      ...||.:.||.||..||||.|||:....|..|:......|||::|||
 Frog   324 EELRGN-SILHNGCVCEGALRVETISSLHYLDCVIKEILRLFSPVSGGYRTVLQTFELDGFQIPK 387

  Fly   410 GTKLLMTNSFLLKDDR----LYPRAKEFIPERWLRRKDDDKSDVLMNKDLNAFIYLPFGFGPRMC 470
            |..:|    :.::|..    ::.....|.|:|:.:.:.:||.        ..|.|||||.|.|.|
 Frog   388 GWSVL----YSIRDTHDTAPVFKDVDVFDPDRFGQDRTEDKD--------GRFHYLPFGGGVRNC 440

  Fly   471 VGKRIVDLEMELTVANL 487
            :||.:..|.:::....|
 Frog   441 LGKHLAKLFLKVLAIEL 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp12c1NP_001287109.1 p450 45..502 CDD:278495 113/472 (24%)
cyp26b1NP_001072655.1 p450 1..468 CDD:386267 113/472 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D871849at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.